Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP17_F_F21
         (894 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1097 + 24284494-24284496,24284946-24285407,24285476-242864...    29   3.8  
11_01_0039 - 290960-291086,291615-291714,291809-292013,292466-29...    29   5.0  
03_02_0602 + 9759055-9759223,9759305-9759455,9759548-9759593,975...    29   5.0  
10_08_0887 - 21311301-21311828,21312001-21312110,21312215-21312392     28   8.7  
03_02_0218 - 6522330-6522458,6523257-6523328,6523555-6523707,652...    28   8.7  

>08_02_1097 +
           24284494-24284496,24284946-24285407,24285476-24286450,
           24286566-24286655,24286760-24287021,24287447-24287472
          Length = 605

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +2

Query: 296 GGKCEYAEVHDMLRIISERLPFKAEP 373
           G  CEYA   D LR+I  R  ++ EP
Sbjct: 537 GDGCEYAHSQDELRVIDARPKYRTEP 562


>11_01_0039 - 290960-291086,291615-291714,291809-292013,292466-292513,
            295071-295646,295828-296260,296470-297338,297433-298227,
            298709-298753,299135-299352,300055-300364,302715-302984
          Length = 1331

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 13/25 (52%), Positives = 19/25 (76%)
 Frame = -1

Query: 462  IIYFIVYSFWLFSSNHFSSAAFCSK 388
            ++YFIV+SF+L S+  F S A CS+
Sbjct: 1232 VVYFIVFSFFLVSA-RFGSCAPCSE 1255


>03_02_0602 +
           9759055-9759223,9759305-9759455,9759548-9759593,
           9759974-9760033,9760519-9760555,9761268-9761347,
           9761413-9761516,9761613-9761673,9762962-9763019,
           9763866-9763918,9764357-9765320,9766131-9766185,
           9767223-9768786
          Length = 1133

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = -1

Query: 123 RAISKCSCFXLPPPVARTPYCFNCIPKA 40
           RA ++  CF  PPP     YC  C+  A
Sbjct: 390 RAFARGICFGDPPPALSPQYCLRCLSVA 417


>10_08_0887 - 21311301-21311828,21312001-21312110,21312215-21312392
          Length = 271

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 17/44 (38%), Positives = 21/44 (47%)
 Frame = -1

Query: 441 SFWLFSSNHFSSAAFCSKISSETGSALKGNLSDIILNMSCTSAY 310
           S W   SNH   A F  +I S++G  L  N + I  N S  S Y
Sbjct: 222 SIWRLDSNHRLQAPFSLRIRSDSGKTLVAN-NVIPANWSPNSNY 264


>03_02_0218 -
           6522330-6522458,6523257-6523328,6523555-6523707,
           6524370-6524543,6525655-6525835,6525923-6525990
          Length = 258

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 19/76 (25%), Positives = 35/76 (46%)
 Frame = +2

Query: 251 HYVTPIKSGRIILEVGGKCEYAEVHDMLRIISERLPFKAEPVSEEILEQKAAEEKWLEEN 430
           H V    +GR+ ++VG   ++ +     R  S  +   A P +   L+ + A      +N
Sbjct: 79  HLVMEDATGRVCIQVG-YLKWTKRSSSCRCSSGLVGTPAAPDASATLKTRIARVPARHKN 137

Query: 431 NQNEYTMKYIIQNNMG 478
            +NE  MK+  +N +G
Sbjct: 138 EENEQGMKWSYENLIG 153


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,692,961
Number of Sequences: 37544
Number of extensions: 309871
Number of successful extensions: 774
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 754
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 773
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2518669100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)