Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP17_F_F20
         (874 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC16A11.09c |tim23||mitochondrial inner membrane presequence t...    33   0.053
SPBC342.03 |||1,3-beta-glucanosyltransferase |Schizosaccharomyce...    29   0.65 
SPBC1921.02 |rad60||DNA repair protein Rad60 |Schizosaccharomyce...    27   2.6  
SPBC83.13 |||mitochondrial tricarboxylic acid transporter|Schizo...    27   3.5  
SPBC25H2.04c |tim22||TIM22 inner membrane protein import complex...    27   3.5  
SPAC11E3.12 |||conserved eukaryotic protein|Schizosaccharomyces ...    26   6.1  
SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyc...    26   8.1  

>SPCC16A11.09c |tim23||mitochondrial inner membrane presequence
           translocase complex subunit Tim23|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 210

 Score = 33.1 bits (72), Expect = 0.053
 Identities = 15/23 (65%), Positives = 17/23 (73%)
 Frame = +1

Query: 568 AGALTGALYKANLGLTAMIVGGS 636
           AGALTGALYK+  GL AM +  S
Sbjct: 167 AGALTGALYKSTRGLRAMAISSS 189


>SPBC342.03 |||1,3-beta-glucanosyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 456

 Score = 29.5 bits (63), Expect = 0.65
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = -3

Query: 347 DETNPPKQTPTNAPHNVDCTTVCSSGETSSN 255
           DE+   +  P N P NV  TT  +SG TSS+
Sbjct: 400 DESTSRRPKPKNKPSNVTSTTSYTSGMTSSS 430


>SPBC1921.02 |rad60||DNA repair protein Rad60 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 406

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 22/96 (22%), Positives = 39/96 (40%), Gaps = 1/96 (1%)
 Frame = +1

Query: 166 ENDYDVLNRPLPGGPQTGWDRVKAMYKKNEFDEVSPELHTVVQSTLCGAXXXXXXXXXXS 345
           E D D  +  +P    +  D     + K+EF    P +  V+Q  + G            
Sbjct: 177 EEDDDNTSADVPLLKHSKSDHSTLYHSKSEFSTNEPVISVVLQLAVIGQRIPNSNISLPR 236

Query: 346 SREAYLYF-IENNQATAYKTVGDAKKKLQDYVTIGF 450
             EA L+F +++NQ      +  +++K  D V + F
Sbjct: 237 DWEAPLFFKVKSNQQFRRVRIAYSERKKVDNVVLVF 272


>SPBC83.13 |||mitochondrial tricarboxylic acid
           transporter|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 293

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 14/48 (29%), Positives = 21/48 (43%)
 Frame = +1

Query: 442 IGFAKGAYKWGWKLSIFTGMFSLIATTISAYRGDTTLIEYTTAGALTG 585
           +GF +G   W W  +   G   L  +    Y G    +  T+AGA+ G
Sbjct: 61  LGFYQGLIPWAWIEASTKGAVLLFTSAELEYWGRRLGLGATSAGAIAG 108


>SPBC25H2.04c |tim22||TIM22 inner membrane protein import complex
           subunit Tim22|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 175

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = +1

Query: 523 ISAYRGDTTLIEYTTAGALTGALYKANLGLTAMIVGGS 636
           I A+R  T +     AG  TG       G  A+++GG+
Sbjct: 121 IEAFRAKTDIYNAIAAGVFTGGALAVRSGPKAIVLGGA 158


>SPAC11E3.12 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 162

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = +3

Query: 414 KEKTARLCNNWICQRCLQ 467
           K+   R+CN+W+CQ+  +
Sbjct: 81  KKPRVRICNSWMCQQAAE 98


>SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 791

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 13/31 (41%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
 Frame = -3

Query: 347 DETNPPKQTPTNAPHNVDCTTVCS-SGETSS 258
           D  NPP  TP     N D + V S SG T++
Sbjct: 214 DSPNPPAATPATVADNDDLSIVSSDSGNTTA 244


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,325,306
Number of Sequences: 5004
Number of extensions: 71544
Number of successful extensions: 184
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 184
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 436477420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)