Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP17_F_F20
         (874 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0826 - 28453018-28453284,28453286-28453594                       33   0.30 
02_02_0492 - 10907529-10907629,10907714-10907953,10908035-109080...    31   0.91 
06_01_1170 - 10002650-10004122                                         29   6.4  
03_01_0648 - 4749150-4749275,4749902-4749986,4750761-4750861,475...    29   6.4  

>04_04_0826 - 28453018-28453284,28453286-28453594
          Length = 191

 Score = 33.1 bits (72), Expect = 0.30
 Identities = 20/56 (35%), Positives = 27/56 (48%)
 Frame = +1

Query: 469 WGWKLSIFTGMFSLIATTISAYRGDTTLIEYTTAGALTGALYKANLGLTAMIVGGS 636
           +G +L +   +F  I +T+   R          AG  TGALY+A  G  A IVG S
Sbjct: 111 YGNRLGVVALLFVGIESTVGGLRDADGWANTVAAGIGTGALYRAAAGPRAAIVGSS 166


>02_02_0492 -
           10907529-10907629,10907714-10907953,10908035-10908098,
           10908416-10908721,10909347-10909561,10909656-10909950,
           10910493-10910597,10911112-10911180,10911433-10911519,
           10911953-10913704,10914964-10915054,10915217-10915488
          Length = 1198

 Score = 31.5 bits (68), Expect = 0.91
 Identities = 19/47 (40%), Positives = 25/47 (53%)
 Frame = +1

Query: 421 KLQDYVTIGFAKGAYKWGWKLSIFTGMFSLIATTISAYRGDTTLIEY 561
           K  D  TI   K      WKL +FT + +L+  T+S+Y G   LIEY
Sbjct: 205 KYTDVTTINLVKALVLTTWKLILFTAVCALL-RTVSSYVG-PYLIEY 249


>06_01_1170 - 10002650-10004122
          Length = 490

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = +1

Query: 139 VLPIFRERNENDYDVLNRPLPGGPQTGWDRVKAMYKK-NEFDEVS 270
           V+P   + N+++  V    +PG P   W ++  MY+   E DEVS
Sbjct: 170 VMPRREDENDDESPVGFPDIPGSPAFPWRQMSRMYRAYKEGDEVS 214


>03_01_0648 -
           4749150-4749275,4749902-4749986,4750761-4750861,
           4750933-4751191,4751382-4751434,4752828-4752990,
           4753181-4754616
          Length = 740

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = +3

Query: 30  EFLKXLSDVLSCLVVIKKGKGSCRNDPNGDQVVSKFCLTNF 152
           E +K    ++  +  ++ G     NDPNG+ V+ K CL NF
Sbjct: 488 ETVKTRKQIMLIISALQPGFIHLVNDPNGNHVIQK-CLKNF 527


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,952,480
Number of Sequences: 37544
Number of extensions: 443969
Number of successful extensions: 1058
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1034
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1057
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2456227356
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)