Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP17_F_F20
(874 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC025715-5|AAP13755.1| 281|Caenorhabditis elegans Hypothetical ... 65 7e-11
U40415-10|AAK39254.1| 215|Caenorhabditis elegans Dnaj domain (p... 31 0.81
Z49073-4|CAA88889.1| 1143|Caenorhabditis elegans Hypothetical pr... 30 2.5
Z81592-8|CAB04730.1| 365|Caenorhabditis elegans Hypothetical pr... 29 4.3
Z81063-5|CAB02956.1| 242|Caenorhabditis elegans Hypothetical pr... 29 4.3
AF273832-1|AAG15180.1| 408|Caenorhabditis elegans nuclear recep... 29 4.3
AF022984-9|AAB69950.2| 393|Caenorhabditis elegans Nuclear hormo... 29 4.3
Z81496-11|CAB04069.2| 448|Caenorhabditis elegans Hypothetical p... 29 5.7
AY204204-1|AAO39205.1| 448|Caenorhabditis elegans nuclear recep... 29 5.7
U41028-4|AAA82357.1| 455|Caenorhabditis elegans Hypothetical pr... 28 7.6
>AC025715-5|AAP13755.1| 281|Caenorhabditis elegans Hypothetical
protein Y38F2AR.3 protein.
Length = 281
Score = 64.9 bits (151), Expect = 7e-11
Identities = 39/135 (28%), Positives = 62/135 (45%)
Frame = +1
Query: 208 PQTGWDRVKAMYKKNEFDEVSPELHTVVQSTLCGAXXXXXXXXXXSSREAYLYFIENNQA 387
P TGW+R+K++Y++ E VV+ + G +R AY NN
Sbjct: 62 PMTGWERLKSIYERENSMEKDVTFR-VVRMSFLGGFLVGGATGYAQARHAYE---TNNVG 117
Query: 388 TAYKTVGDAKKKLQDYVTIGFAKGAYKWGWKLSIFTGMFSLIATTISAYRGDTTLIEYTT 567
Y + DA K+ DY + FAKG + G+K ++ +G +AT I+AYR +
Sbjct: 118 RKYLSPSDAVKRKIDYAIVRFAKGGFGVGFKCALISGSIVFLATHITAYRDKFASWYFPA 177
Query: 568 AGALTGALYKANLGL 612
A G ++ +GL
Sbjct: 178 ISASVGGVFTFPIGL 192
>U40415-10|AAK39254.1| 215|Caenorhabditis elegans Dnaj domain
(prokaryotic heat shockprotein) protein 14 protein.
Length = 215
Score = 31.5 bits (68), Expect = 0.81
Identities = 11/27 (40%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Frame = -2
Query: 576 CTCSCVLDECCISTICRYCCG-YQTEH 499
C C C+ CC C +CCG Y+ +H
Sbjct: 146 CCCGCM---CCCQCCCNFCCGKYKPKH 169
>Z49073-4|CAA88889.1| 1143|Caenorhabditis elegans Hypothetical
protein ZK970.5 protein.
Length = 1143
Score = 29.9 bits (64), Expect = 2.5
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = +1
Query: 217 GWDRVKAMYKKNEFDEVSPELHTVVQS 297
GWDRV +Y KNE D S ++ V +S
Sbjct: 175 GWDRVALLYFKNELDYCSSVVNDVEKS 201
>Z81592-8|CAB04730.1| 365|Caenorhabditis elegans Hypothetical
protein T16G1.8 protein.
Length = 365
Score = 29.1 bits (62), Expect = 4.3
Identities = 17/42 (40%), Positives = 23/42 (54%)
Frame = -3
Query: 662 TYCT*YSS*EPPTIIAVNPKFALYNAPVSAPAVVYSMSVVSP 537
+Y T YS PP I+ +P Y APVSAP+ + S+ P
Sbjct: 98 SYSTAYSMAPPPLILPSSPS---YVAPVSAPSYSLTPSISIP 136
>Z81063-5|CAB02956.1| 242|Caenorhabditis elegans Hypothetical
protein F15D3.7 protein.
Length = 242
Score = 29.1 bits (62), Expect = 4.3
Identities = 17/44 (38%), Positives = 26/44 (59%)
Frame = +1
Query: 499 MFSLIATTISAYRGDTTLIEYTTAGALTGALYKANLGLTAMIVG 630
M+S + + + R + L + AGALTGA+Y++ GL A VG
Sbjct: 171 MYSALEIGLRSVRAEDELNGFG-AGALTGAIYRSPHGLKASGVG 213
>AF273832-1|AAG15180.1| 408|Caenorhabditis elegans nuclear receptor
NHR-90 protein.
Length = 408
Score = 29.1 bits (62), Expect = 4.3
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +3
Query: 420 KTARLCNNWICQRCLQVGMEIKYFYRN 500
+ AR C +RC + GM+I+YF N
Sbjct: 69 EAARFCKPCRLKRCYEAGMKIEYFQHN 95
>AF022984-9|AAB69950.2| 393|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 90 protein.
Length = 393
Score = 29.1 bits (62), Expect = 4.3
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +3
Query: 420 KTARLCNNWICQRCLQVGMEIKYFYRN 500
+ AR C +RC + GM+I+YF N
Sbjct: 54 EAARFCKPCRLKRCYEAGMKIEYFQHN 80
>Z81496-11|CAB04069.2| 448|Caenorhabditis elegans Hypothetical
protein F09C6.9 protein.
Length = 448
Score = 28.7 bits (61), Expect = 5.7
Identities = 19/55 (34%), Positives = 21/55 (38%)
Frame = +3
Query: 315 CWCLFRRICLISRSLPVFY*KXXXXXXXXXXXCKEKTARLCNNWICQRCLQVGME 479
C FRR+CL RS K KT C QRCL VGM+
Sbjct: 70 CKTFFRRMCLSGRSFSC------KLDRDCFDLTKRKTPAKCRACRLQRCLSVGMD 118
>AY204204-1|AAO39205.1| 448|Caenorhabditis elegans nuclear receptor
NHR-116 protein.
Length = 448
Score = 28.7 bits (61), Expect = 5.7
Identities = 19/55 (34%), Positives = 21/55 (38%)
Frame = +3
Query: 315 CWCLFRRICLISRSLPVFY*KXXXXXXXXXXXCKEKTARLCNNWICQRCLQVGME 479
C FRR+CL RS K KT C QRCL VGM+
Sbjct: 70 CKTFFRRMCLSGRSFSC------KLDRDCFDLTKRKTPAKCRACRLQRCLSVGMD 118
>U41028-4|AAA82357.1| 455|Caenorhabditis elegans Hypothetical
protein C25G6.5 protein.
Length = 455
Score = 28.3 bits (60), Expect = 7.6
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Frame = +2
Query: 119 SGCLQVLSYQFFVKEMKMITMSLTD-LCLEALRQAGIGLKPCIKKTNSTKF 268
S CL L Y FF ++ M L D + L +LR G + +KK+ T+F
Sbjct: 317 SACLNPLIYAFFNHNFRIEFMHLFDRVGLRSLRVVIFGEQESLKKSMRTEF 367
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,668,845
Number of Sequences: 27780
Number of extensions: 422897
Number of successful extensions: 1151
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1094
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1145
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2192413762
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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