Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP17_F_F20
         (874 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex det...    23   3.7  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    23   4.9  
DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex det...    22   6.4  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    22   8.5  

>DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 10/34 (29%), Positives = 20/34 (58%)
 Frame = +1

Query: 79  KRERDLVEMIRTVIRLSPSFVLPIFRERNENDYD 180
           KRER+  +  + +  LS +++  I    N+N+Y+
Sbjct: 70  KRERERSKERKIISSLSNNYISNISNYNNDNNYN 103


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 9/32 (28%), Positives = 19/32 (59%)
 Frame = +3

Query: 498 NVQFDSHNNICISWRYNTHRVHNCRCTYRSIV 593
           N +++ +NN   +  YN +  +NC+  Y +I+
Sbjct: 328 NYKYNYNNNNYNNNNYNNNYNNNCKKLYYNII 359


>DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 22.2 bits (45), Expect = 6.4
 Identities = 10/34 (29%), Positives = 19/34 (55%)
 Frame = +1

Query: 79  KRERDLVEMIRTVIRLSPSFVLPIFRERNENDYD 180
           KRER+  +  + +  LS +++  I    N N+Y+
Sbjct: 70  KRERERSKERKIISSLSNNYISNISNYNNNNNYN 103


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = -1

Query: 715 YIAHTXTSNFNIPIIKSPPIVLN 647
           ++ +   SNF +    SPP+V+N
Sbjct: 90  FVINLAISNFLMMFCMSPPMVIN 112


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 230,697
Number of Sequences: 438
Number of extensions: 5253
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28280841
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)