Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP17_F_F18
         (910 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    31   0.17 
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M...    27   4.9  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    26   6.4  

>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 31.5 bits (68), Expect = 0.17
 Identities = 22/61 (36%), Positives = 22/61 (36%), Gaps = 3/61 (4%)
 Frame = -2

Query: 822 GGGLGXFYXXGGGGXPPXGGXGXFFFFFXGG---GXXF*XXXXPXGLXGGXAXGGGXXXK 652
           GGG G F    GG  P  GG G F  F   G   G        P G  GG    GG    
Sbjct: 187 GGGFGGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGG 246

Query: 651 F 649
           F
Sbjct: 247 F 247



 Score = 27.1 bits (57), Expect = 3.7
 Identities = 24/73 (32%), Positives = 24/73 (32%)
 Frame = -2

Query: 867 GGGFXQXGXQGGFXXGGGLGXFYXXGGGGXPPXGGXGXFFFFFXGGGXXF*XXXXPXGLX 688
           GG        GGF   GG G      GG     GG G     F GG   F     P G  
Sbjct: 195 GGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGG----FEGGPGGF--GGGPGGFG 248

Query: 687 GGXAXGGGXXXKF 649
           GG    GG    F
Sbjct: 249 GGLGGFGGGPGGF 261


>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 500

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 16/41 (39%), Positives = 17/41 (41%)
 Frame = -2

Query: 885 FXXXXXGGGFXQXGXQGGFXXGGGLGXFYXXGGGGXPPXGG 763
           F     GGG    G +GGF   GG G     GGG     GG
Sbjct: 440 FSTPRTGGG--SRGGRGGFGGRGGFGGRGGFGGGRGRGRGG 478


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 17/53 (32%), Positives = 19/53 (35%), Gaps = 10/53 (18%)
 Frame = +2

Query: 665 PPPXAXPPKR-----PXGXXXX*KXXPPPXKKKKKX-----PXPPXGGXPPPP 793
           PPP   P +R     P G        PPP    +       P PP G   PPP
Sbjct: 311 PPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPP 363


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,330,780
Number of Sequences: 5004
Number of extensions: 14454
Number of successful extensions: 32
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 460503700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)