Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP17_F_F15
(970 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0146 + 26969011-26969995,26970878-26970930 33 0.45
04_03_0904 + 20717005-20718087 31 1.8
12_02_0299 - 17051570-17052474,17053542-17053755 30 3.2
02_05_0686 - 30900748-30902167,30903442-30904742 30 3.2
12_02_1174 - 26696869-26698191 29 5.6
03_06_0471 + 34169562-34169892,34170121-34170347 29 5.6
03_02_0455 - 8630543-8630893,8630994-8631068,8631149-8631223,863... 29 7.4
03_02_0155 - 5974118-5974173,5974242-5974314,5974393-5974500,597... 28 9.7
>01_06_0146 + 26969011-26969995,26970878-26970930
Length = 345
Score = 32.7 bits (71), Expect = 0.45
Identities = 23/87 (26%), Positives = 27/87 (31%), Gaps = 1/87 (1%)
Frame = +3
Query: 675 PIXLXPPGXIHDKXSDAQSPXGGGQXARDL*HNPPAFXPXGXVPPXSXLPX-SXXPXPRY 851
P PP SP G +R + PA P P LP + P PR
Sbjct: 42 PTPPPPPLPASAAAPTTPSPNHSGDPSRPIPSQAPAPPPPPTADPSPPLPHDNRTPQPRA 101
Query: 852 PXXPXXXLSXPSGEKPLXXFPQXPPTP 932
P P+ P P PP P
Sbjct: 102 APPPAPAPDQPAPPSPPPSLPPSPPAP 128
>04_03_0904 + 20717005-20718087
Length = 360
Score = 30.7 bits (66), Expect = 1.8
Identities = 15/53 (28%), Positives = 18/53 (33%)
Frame = +3
Query: 774 PPAFXPXGXVPPXSXLPXSXXPXPRYPXXPXXXLSXPSGEKPLXXFPQXPPTP 932
PP + P P P + P P+ P P P PQ PTP
Sbjct: 258 PPTYKPQPKPTPTPYTPPTYKPQPKPTPTPTPYTPTPKPNPPPTYKPQPKPTP 310
Score = 28.7 bits (61), Expect = 7.4
Identities = 18/60 (30%), Positives = 21/60 (35%), Gaps = 2/60 (3%)
Frame = +3
Query: 774 PPAFXPXGXV-PPXSXLPX-SXXPXPRYPXXPXXXLSXPSGEKPLXXFPQXPPTPXGLXP 947
PP++ P PP + P P P Y P P P PQ PTP P
Sbjct: 215 PPSYKPQPKPNPPPTYKPQPKPNPPPTYKPAPPTYKPQPKPNPPPTYKPQPKPTPTPYTP 274
>12_02_0299 - 17051570-17052474,17053542-17053755
Length = 372
Score = 29.9 bits (64), Expect = 3.2
Identities = 18/57 (31%), Positives = 20/57 (35%)
Frame = +3
Query: 777 PAFXPXGXVPPXSXLPXSXXPXPRYPXXPXXXLSXPSGEKPLXXFPQXPPTPXGLXP 947
P P PP L P +P P L+ PS P FP PP P P
Sbjct: 218 PFCTPRPWFPPIPFLTPPPPPFLPFPLPPIPFLTPPSPPPPAFPFP-LPPWPWAPPP 273
Score = 28.3 bits (60), Expect = 9.7
Identities = 17/51 (33%), Positives = 19/51 (37%)
Frame = +3
Query: 774 PPAFXPXGXVPPXSXLPXSXXPXPRYPXXPXXXLSXPSGEKPLXXFPQXPP 926
PP F P +PP +P P P P P P P FP PP
Sbjct: 236 PPPFLPF-PLPP---IPFLTPPSPPPPAFPFPLPPWPWAPPPAFPFPHLPP 282
Score = 28.3 bits (60), Expect = 9.7
Identities = 17/55 (30%), Positives = 18/55 (32%), Gaps = 1/55 (1%)
Frame = +3
Query: 768 HNPPAFXPXGXVPPXSX-LPXSXXPXPRYPXXPXXXLSXPSGEKPLXXFPQXPPT 929
H PP F P PP P P P P PS P P PP+
Sbjct: 279 HLPPIFSPPSPPPPPPPAFPFPFPQLPPLPHFPPLPSFYPSPPPPPPPPPPPPPS 333
>02_05_0686 - 30900748-30902167,30903442-30904742
Length = 906
Score = 29.9 bits (64), Expect = 3.2
Identities = 17/57 (29%), Positives = 19/57 (33%), Gaps = 2/57 (3%)
Frame = +3
Query: 774 PPAFXPXGXVPPXSXLPXSXXPXP--RYPXXPXXXLSXPSGEKPLXXFPQXPPTPXG 938
PP P PP P + P P + P P P P P PP P G
Sbjct: 316 PPPPKPAAAAPPPPPPPKAAPPPPPPKGPPPPPPAKGPPPPPPPKGPSPPPPPPPGG 372
>12_02_1174 - 26696869-26698191
Length = 440
Score = 29.1 bits (62), Expect = 5.6
Identities = 16/58 (27%), Positives = 18/58 (31%)
Frame = +3
Query: 774 PPAFXPXGXVPPXSXLPXSXXPXPRYPXXPXXXLSXPSGEKPLXXFPQXPPTPXGLXP 947
PP P PP P P P P + P + P P PP P P
Sbjct: 172 PPVVQPKPQPPPSLQPPSPPPPPPTRPPSVKPPVVQPKPQPPPTLPPPSPPPPPPTVP 229
Score = 28.3 bits (60), Expect = 9.7
Identities = 20/65 (30%), Positives = 22/65 (33%), Gaps = 3/65 (4%)
Frame = +3
Query: 768 HNPPAFXPXGXVPPXSXLPXSXXPXPRYPXXP---XXXLSXPSGEKPLXXFPQXPPTPXG 938
H PP P PP S P P P P P + P + P P PP P
Sbjct: 139 HRPPPVKPQ---PPPSLPPPPPPPPPPPPPRPPSVKPPVVQPKPQPPPSLQPPSPPPPPP 195
Query: 939 LXPHS 953
P S
Sbjct: 196 TRPPS 200
>03_06_0471 + 34169562-34169892,34170121-34170347
Length = 185
Score = 29.1 bits (62), Expect = 5.6
Identities = 17/56 (30%), Positives = 19/56 (33%)
Frame = +3
Query: 789 PXGXVPPXSXLPXSXXPXPRYPXXPXXXLSXPSGEKPLXXFPQXPPTPXGLXPHSG 956
P G PP P + P YP P G P +PQ P P P G
Sbjct: 52 PPGQYPPAGGYPGAQYPPSGYPPSQG---GYPPGAYPPSGYPQQPGYPPAGYPGHG 104
>03_02_0455 -
8630543-8630893,8630994-8631068,8631149-8631223,
8631332-8631397,8631891-8631967,8632659-8633070
Length = 351
Score = 28.7 bits (61), Expect = 7.4
Identities = 18/56 (32%), Positives = 22/56 (39%)
Frame = +3
Query: 771 NPPAFXPXGXVPPXSXLPXSXXPXPRYPXXPXXXLSXPSGEKPLXXFPQXPPTPXG 938
N P P G +P S P P P+ P P P P+ P+ PP P G
Sbjct: 248 NKPPAAP-GTLPNGSGGPPRPPP-PQVPPPPPQAPPPPPPNAPMGMPPRIPPPPVG 301
>03_02_0155 -
5974118-5974173,5974242-5974314,5974393-5974500,
5975189-5976914,5977065-5977620,5978008-5978485
Length = 998
Score = 28.3 bits (60), Expect = 9.7
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = +3
Query: 774 PPAFXPXGXVPPXSXLPXSXXPXP 845
PP+F P +PP S P S P P
Sbjct: 76 PPSFAPENALPPSSPPPPSPPPPP 99
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,752,241
Number of Sequences: 37544
Number of extensions: 276215
Number of successful extensions: 551
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 483
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 544
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2811537600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -