Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP17_F_F15
         (970 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def...    30   2.2  
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def...    30   2.2  
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.    30   2.2  
Z83114-7|CAJ76943.1|  525|Caenorhabditis elegans Hypothetical pr...    29   3.8  
Z83114-6|CAB63235.1|  589|Caenorhabditis elegans Hypothetical pr...    29   3.8  
U41543-12|AAZ91345.1|  401|Caenorhabditis elegans Groundhog (hed...    28   8.7  

>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoformb protein.
          Length = 1437

 Score = 30.3 bits (65), Expect = 2.2
 Identities = 19/54 (35%), Positives = 21/54 (38%)
 Frame = +3

Query: 795 GXVPPXSXLPXSXXPXPRYPXXPXXXLSXPSGEKPLXXFPQXPPTPXGLXPHSG 956
           G  PP    P +  P P  P         P G  P+   P  PP P GL P SG
Sbjct: 712 GPPPPPGLPPITGGPPPPPP---------PGGLPPITGGPPPPPPPGGLPPISG 756


>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoforma protein.
          Length = 1435

 Score = 30.3 bits (65), Expect = 2.2
 Identities = 19/54 (35%), Positives = 21/54 (38%)
 Frame = +3

Query: 795 GXVPPXSXLPXSXXPXPRYPXXPXXXLSXPSGEKPLXXFPQXPPTPXGLXPHSG 956
           G  PP    P +  P P  P         P G  P+   P  PP P GL P SG
Sbjct: 712 GPPPPPGLPPITGGPPPPPP---------PGGLPPITGGPPPPPPPGGLPPISG 756


>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
          Length = 1018

 Score = 30.3 bits (65), Expect = 2.2
 Identities = 19/54 (35%), Positives = 21/54 (38%)
 Frame = +3

Query: 795 GXVPPXSXLPXSXXPXPRYPXXPXXXLSXPSGEKPLXXFPQXPPTPXGLXPHSG 956
           G  PP    P +  P P  P         P G  P+   P  PP P GL P SG
Sbjct: 295 GPPPPPGLPPITGGPPPPPP---------PGGLPPITGGPPPPPPPGGLPPISG 339


>Z83114-7|CAJ76943.1|  525|Caenorhabditis elegans Hypothetical
           protein K09B11.5b protein.
          Length = 525

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 14/49 (28%), Positives = 17/49 (34%)
 Frame = +3

Query: 804 PPXSXLPXSXXPXPRYPXXPXXXLSXPSGEKPLXXFPQXPPTPXGLXPH 950
           PP S  P S  P  + P         P  + P+   P  PP      PH
Sbjct: 475 PPVSQPPVSQPPVSQPPVSQPPVSQPPVSQPPVPQHPMTPPPASSARPH 523



 Score = 28.3 bits (60), Expect = 8.7
 Identities = 12/30 (40%), Positives = 14/30 (46%)
 Frame = +3

Query: 774 PPAFXPXGXVPPXSXLPXSXXPXPRYPXXP 863
           PP   P    PP S  P S  P P++P  P
Sbjct: 485 PPVSQPPVSQPPVSQPPVSQPPVPQHPMTP 514


>Z83114-6|CAB63235.1|  589|Caenorhabditis elegans Hypothetical
           protein K09B11.5a protein.
          Length = 589

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 14/49 (28%), Positives = 17/49 (34%)
 Frame = +3

Query: 804 PPXSXLPXSXXPXPRYPXXPXXXLSXPSGEKPLXXFPQXPPTPXGLXPH 950
           PP S  P S  P  + P         P  + P+   P  PP      PH
Sbjct: 539 PPVSQPPVSQPPVSQPPVSQPPVSQPPVSQPPVPQHPMTPPPASSARPH 587



 Score = 28.3 bits (60), Expect = 8.7
 Identities = 12/30 (40%), Positives = 14/30 (46%)
 Frame = +3

Query: 774 PPAFXPXGXVPPXSXLPXSXXPXPRYPXXP 863
           PP   P    PP S  P S  P P++P  P
Sbjct: 549 PPVSQPPVSQPPVSQPPVSQPPVPQHPMTP 578


>U41543-12|AAZ91345.1|  401|Caenorhabditis elegans Groundhog
           (hedgehog-like family)protein 7 protein.
          Length = 401

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 14/44 (31%), Positives = 18/44 (40%), Gaps = 1/44 (2%)
 Frame = +3

Query: 804 PPXSXLPXSXXPXPRYPXXPXXXLSXPSGEKPLXXFPQXP-PTP 932
           PP +  P    P P  P  P    + P+   PL  +PQ   P P
Sbjct: 52  PPPAPYPQQAVPAPAPPPAPYPQHAVPAPAPPLASYPQNAVPVP 95


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,871,538
Number of Sequences: 27780
Number of extensions: 215915
Number of successful extensions: 372
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 278
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 345
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2510937120
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)