Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP17_F_F14
         (866 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26A3.04 |rpl2002|rpl20, rpl20-2|60S ribosomal protein L20|Sc...   131   1e-31
SPAC3A12.10 |rpl2001|rpl20-1, rpl20, yl17b, rpl18a-2|60S ribosom...   131   1e-31
SPAC57A7.08 |pzh1||serine/threonine protein phosphatase Pzh1|Sch...    27   2.6  
SPBC1539.02 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    27   3.5  
SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting pro...    27   4.6  

>SPAC26A3.04 |rpl2002|rpl20, rpl20-2|60S ribosomal protein
           L20|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 176

 Score =  131 bits (316), Expect = 1e-31
 Identities = 71/142 (50%), Positives = 85/142 (59%), Gaps = 4/142 (2%)
 Frame = +3

Query: 183 VAKSRFWYFLRQLKKFKKTTGEIVXXXXXXXXXXXXXXNFGIWLRYESRSGVHNMYREYR 362
           VAKSR+WYFL+ + K KK TGEIV               FGIW+RY+SRSG HNMY+E+R
Sbjct: 35  VAKSRYWYFLKMINKVKKATGEIVAINEISEPKPLKAKVFGIWIRYDSRSGTHNMYKEFR 94

Query: 363 DLSVGGAVTQCYRDMGARHRARAHSIQIIK-VEVIKAAACRRPQVKQFHNSTIRFPLPKR 539
           D +  GAV   Y DM ARHRAR  SI+I+K VEV K    RR  VKQ  N  ++FPLP R
Sbjct: 95  DTTRVGAVEAMYADMAARHRARFRSIRILKVVEVEKKEDVRRNYVKQLLNPHLKFPLPHR 154

Query: 540 ---VHHYKRLNTFAYKRPXTYF 596
              V        FA  RP T++
Sbjct: 155 RTGVVGLAGKKVFAPHRPSTFY 176



 Score = 48.8 bits (111), Expect = 1e-06
 Identities = 18/41 (43%), Positives = 31/41 (75%)
 Frame = +2

Query: 86  LREYEVIGRKLPSENEPKPPLYKMRIFSPXSNCRQISFLVF 208
           L+EY+V+GRK+P+E+EP P L++MR+F+P  +  +  +  F
Sbjct: 3   LKEYQVVGRKVPTEHEPVPKLFRMRLFAPNESVAKSRYWYF 43


>SPAC3A12.10 |rpl2001|rpl20-1, rpl20, yl17b, rpl18a-2|60S ribosomal
           protein L20a|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 176

 Score =  131 bits (316), Expect = 1e-31
 Identities = 71/142 (50%), Positives = 85/142 (59%), Gaps = 4/142 (2%)
 Frame = +3

Query: 183 VAKSRFWYFLRQLKKFKKTTGEIVXXXXXXXXXXXXXXNFGIWLRYESRSGVHNMYREYR 362
           VAKSR+WYFL+ + K KK TGEIV               FGIW+RY+SRSG HNMY+E+R
Sbjct: 35  VAKSRYWYFLKMINKVKKATGEIVAINEISEPKPLKAKVFGIWIRYDSRSGTHNMYKEFR 94

Query: 363 DLSVGGAVTQCYRDMGARHRARAHSIQIIK-VEVIKAAACRRPQVKQFHNSTIRFPLPKR 539
           D +  GAV   Y DM ARHRAR  SI+I+K VEV K    RR  VKQ  N  ++FPLP R
Sbjct: 95  DTTRVGAVEAMYADMAARHRARFRSIRILKVVEVEKKEDVRRNYVKQLLNPHLKFPLPHR 154

Query: 540 ---VHHYKRLNTFAYKRPXTYF 596
              V        FA  RP T++
Sbjct: 155 RTGVVGLAGKKVFAPHRPSTFY 176



 Score = 48.8 bits (111), Expect = 1e-06
 Identities = 18/41 (43%), Positives = 31/41 (75%)
 Frame = +2

Query: 86  LREYEVIGRKLPSENEPKPPLYKMRIFSPXSNCRQISFLVF 208
           L+EY+V+GRK+P+E+EP P L++MR+F+P  +  +  +  F
Sbjct: 3   LKEYQVVGRKVPTEHEPVPKLFRMRLFAPNESVAKSRYWYF 43


>SPAC57A7.08 |pzh1||serine/threonine protein phosphatase
           Pzh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 515

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 19/71 (26%), Positives = 29/71 (40%)
 Frame = +2

Query: 347 VP*IP*PECRWSCHSVLQRYGS*TQSPSSFNTDYQSGSNQGCCVSPSTGQTVPQQHHQIP 526
           +P  P P    +  +VLQ++       SS +      SNQ   +SPST  +    HH   
Sbjct: 68  LPPPPSPGILATSPAVLQKHQQEDSGNSSQSPTSPHPSNQPAMLSPSTAASQHHHHHSSS 127

Query: 527 IAQTCAPLQET 559
            +   +P   T
Sbjct: 128 SSYAVSPTSPT 138


>SPBC1539.02 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 386

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 14/49 (28%), Positives = 25/49 (51%)
 Frame = -2

Query: 250 ISPVVFLNFLSCLRKYQKRDLATIGXRRENSHFIQGRFGLVLRRELTAD 104
           + P  F++ +  L K Q+R       + ++   +   FGLVL ++ TAD
Sbjct: 318 LKPTNFMSQIHRLAKVQERKEEEERKKGKDGQIVDAGFGLVLSKDDTAD 366


>SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting
           protein 3 homolog Bud6|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1385

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
 Frame = +1

Query: 187 PNLVSGIS*DNLRSSRRPLVKLSLLRKFQRK---APSRLRILVSGYAMSL 327
           P++V   S D+ + SRRP +  S  RKF  K    PS  + L  G   SL
Sbjct: 302 PSIVRQDSHDSNKLSRRPTINTSFDRKFSPKLTRTPSLTKSLDPGTPTSL 351


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,691,398
Number of Sequences: 5004
Number of extensions: 51363
Number of successful extensions: 130
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 432473040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)