Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP17_F_F14
         (866 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_07_0131 + 27898028-27898042,27898159-27898274,27898361-278984...   137   1e-32
01_06_0730 - 31552747-31553088,31553583-31553646,31553743-315538...   135   4e-32
01_06_0180 - 27260099-27260440,27261236-27261350,27261403-272615...   123   2e-28
12_02_0133 - 14057469-14057497,14057516-14057581,14057770-140583...    29   3.6  
12_01_0752 - 6798938-6799312,6799628-6799768,6800257-6800325,680...    29   3.6  

>05_07_0131 +
           27898028-27898042,27898159-27898274,27898361-27898424,
           27899450-27899791
          Length = 178

 Score =  137 bits (331), Expect = 1e-32
 Identities = 61/118 (51%), Positives = 78/118 (66%)
 Frame = +3

Query: 186 AKSRFWYFLRQLKKFKKTTGEIVXXXXXXXXXXXXXXNFGIWLRYESRSGVHNMYREYRD 365
           AKS+FWYFLR+LKK KK+ G+++              N+GIWLRY+SR+G HNMY+EYRD
Sbjct: 39  AKSKFWYFLRKLKKVKKSNGQMLAINEIFERNPTTIKNYGIWLRYQSRTGYHNMYKEYRD 98

Query: 366 LSVGGAVTQCYRDMGARHRARAHSIQIIKVEVIKAAACRRPQVKQFHNSTIRFPLPKR 539
            ++ GAV Q Y +M +RHR R   IQIIK   +    C+R   KQFHNS I+FPL  R
Sbjct: 99  TTLNGAVEQMYTEMASRHRVRFPCIQIIKTATVHFKLCKRDNTKQFHNSNIKFPLVYR 156



 Score = 31.5 bits (68), Expect = 0.90
 Identities = 9/29 (31%), Positives = 21/29 (72%)
 Frame = +2

Query: 83  QLREYEVIGRKLPSENEPKPPLYKMRIFS 169
           +  +Y+V+GR LP+  +  P +Y+M++++
Sbjct: 5   RFHQYQVVGRALPTPGDEHPKIYRMKLWA 33


>01_06_0730 -
           31552747-31553088,31553583-31553646,31553743-31553858,
           31553964-31553978
          Length = 178

 Score =  135 bits (327), Expect = 4e-32
 Identities = 61/118 (51%), Positives = 77/118 (65%)
 Frame = +3

Query: 186 AKSRFWYFLRQLKKFKKTTGEIVXXXXXXXXXXXXXXNFGIWLRYESRSGVHNMYREYRD 365
           AKS+FWYFLR+LKK KK+ G+I+              N+GIWLRY+SR+G HNMY+EYRD
Sbjct: 39  AKSKFWYFLRKLKKVKKSNGQILAINEIFEKNPTTIKNYGIWLRYQSRTGYHNMYKEYRD 98

Query: 366 LSVGGAVTQCYRDMGARHRARAHSIQIIKVEVIKAAACRRPQVKQFHNSTIRFPLPKR 539
            ++ GAV Q Y +M +RHR R   IQIIK   +    C+R   KQFH S I+FPL  R
Sbjct: 99  TTLNGAVEQMYTEMASRHRVRFPCIQIIKTATVHFKLCKRDNTKQFHKSDIKFPLVYR 156



 Score = 31.1 bits (67), Expect = 1.2
 Identities = 9/29 (31%), Positives = 21/29 (72%)
 Frame = +2

Query: 83  QLREYEVIGRKLPSENEPKPPLYKMRIFS 169
           +  +Y+V+GR LP+  +  P +Y+M++++
Sbjct: 5   RFHQYQVVGRGLPTPTDEHPKIYRMKLWA 33


>01_06_0180 -
           27260099-27260440,27261236-27261350,27261403-27261518,
           27261594-27261608
          Length = 195

 Score =  123 bits (296), Expect = 2e-28
 Identities = 55/112 (49%), Positives = 72/112 (64%)
 Frame = +3

Query: 204 YFLRQLKKFKKTTGEIVXXXXXXXXXXXXXXNFGIWLRYESRSGVHNMYREYRDLSVGGA 383
           YFLR+LKK KK+ G+++              N+GIWLRY+SR+G HNMY+EYRD ++ GA
Sbjct: 62  YFLRKLKKVKKSNGQMLAINEIFERNPTTIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGA 121

Query: 384 VTQCYRDMGARHRARAHSIQIIKVEVIKAAACRRPQVKQFHNSTIRFPLPKR 539
           V Q Y +M +RHR R   IQIIK   +    C+R   KQFHN +I+FPL  R
Sbjct: 122 VEQMYTEMASRHRVRFPCIQIIKTATVHFKLCKRDNTKQFHNGSIKFPLVYR 173



 Score = 31.5 bits (68), Expect = 0.90
 Identities = 9/29 (31%), Positives = 21/29 (72%)
 Frame = +2

Query: 83  QLREYEVIGRKLPSENEPKPPLYKMRIFS 169
           +  +Y+V+GR LP+  +  P +Y+M++++
Sbjct: 5   RFHQYQVVGRALPTPGDEHPKIYRMKLWA 33


>12_02_0133 - 14057469-14057497,14057516-14057581,14057770-14058363,
            14058450-14058570,14058926-14059320,14059410-14059534,
            14059646-14059876,14060012-14060484,14060587-14060693,
            14060842-14061172,14061222-14061250,14061345-14061901,
            14062170-14062255,14062344-14062406,14062646-14063001,
            14063101-14063356
          Length = 1272

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 15/47 (31%), Positives = 21/47 (44%)
 Frame = +2

Query: 419  QSPSSFNTDYQSGSNQGCCVSPSTGQTVPQQHHQIPIAQTCAPLQET 559
            Q P S  T+YQ  SN     +    Q   + HHQ+PI  + +    T
Sbjct: 950  QCPQSTETNYQRCSNGETESNQPVSQNELEDHHQVPITASSSTNNST 996


>12_01_0752 -
           6798938-6799312,6799628-6799768,6800257-6800325,
           6800407-6800454,6801740-6801836,6801922-6802001,
           6802099-6802170,6802335-6802429,6802853-6802934,
           6805476-6805853
          Length = 478

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 4/41 (9%)
 Frame = +2

Query: 437 NTDYQSGSNQGCC----VSPSTGQTVPQQHHQIPIAQTCAP 547
           N  +  G N+G        P+  QT P+QH Q+PI  T  P
Sbjct: 406 NNHHHQGGNRGGAHHVGTPPNQQQTKPEQHPQLPIGATKQP 446


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,688,444
Number of Sequences: 37544
Number of extensions: 338411
Number of successful extensions: 968
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 950
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 968
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2432722788
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)