Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP17_F_F13
         (899 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q23RA1 Cluster: Putative uncharacterized protein; n=1; ...    41   0.037
UniRef50_Q8D2V4 Cluster: Ffh protein; n=1; Wigglesworthia glossi...    38   0.46 
UniRef50_Q4UAZ9 Cluster: Putative uncharacterized protein; n=2; ...    35   2.5  
UniRef50_A0CBI2 Cluster: Chromosome undetermined scaffold_164, w...    34   4.3  
UniRef50_Q6FME9 Cluster: DNA replication regulator SLD2; n=1; Ca...    33   7.5  
UniRef50_UPI00005F9318 Cluster: hypothetical protein YfreA_01001...    33   9.9  

>UniRef50_Q23RA1 Cluster: Putative uncharacterized protein; n=1;
           Tetrahymena thermophila SB210|Rep: Putative
           uncharacterized protein - Tetrahymena thermophila SB210
          Length = 1654

 Score = 41.1 bits (92), Expect = 0.037
 Identities = 24/96 (25%), Positives = 48/96 (50%)
 Frame = +2

Query: 122 THRERTMISEMQLVVSINDTILHTLTNEIKSGQNNVNALQEFQKDVNLLLTKMIGDLLHS 301
           TH +  ++   +L   +ND IL +L N++ +  N +N+     + +NL L  +   LL  
Sbjct: 683 THHQHVLVKFTELEEQLNDNILQSL-NKVPALTNTINSSNSQNEQINLELFNLSQKLLQM 741

Query: 302 GNNEMVEDEYCSTDDDQPPISPKKTRK*NLVQTNFE 409
             +++V   +      +  IS +++ K N+ + NFE
Sbjct: 742 QQDKLVSQRFIQQQQSKLNISSQQS-KININKQNFE 776


>UniRef50_Q8D2V4 Cluster: Ffh protein; n=1; Wigglesworthia
           glossinidia endosymbiont of Glossina brevipalpis|Rep:
           Ffh protein - Wigglesworthia glossinidia brevipalpis
          Length = 446

 Score = 37.5 bits (83), Expect = 0.46
 Identities = 23/76 (30%), Positives = 43/76 (56%), Gaps = 5/76 (6%)
 Frame = +2

Query: 77  VNKNKHY--LAANLSCFTHRERTMISEMQLVVSINDTILHTLTNEIKSGQNNVNALQEFQ 250
           +NK+  Y  L  + + F+H  + MI E+QL+ SI+         +   GQ+++N+++ F 
Sbjct: 177 MNKSSLYDVLLIDTAGFSHTNKKMIKEIQLLQSISSPSETLFIVDSMMGQDSINSIKTFN 236

Query: 251 KDVNL---LLTKMIGD 289
           +  +L   +LTK+ GD
Sbjct: 237 EKFSLTGVILTKLDGD 252


>UniRef50_Q4UAZ9 Cluster: Putative uncharacterized protein; n=2;
           Theileria|Rep: Putative uncharacterized protein -
           Theileria annulata
          Length = 785

 Score = 35.1 bits (77), Expect = 2.5
 Identities = 17/52 (32%), Positives = 29/52 (55%)
 Frame = +2

Query: 155 QLVVSINDTILHTLTNEIKSGQNNVNALQEFQKDVNLLLTKMIGDLLHSGNN 310
           ++ VS N   ++TL   I S + N N+L+E   D+N L  K + ++ +  NN
Sbjct: 96  EIKVSNNAVKINTLEENINSLKENTNSLKEIGSDMNNLTLKRVNNIENKSNN 147


>UniRef50_A0CBI2 Cluster: Chromosome undetermined scaffold_164,
           whole genome shotgun sequence; n=2; Alveolata|Rep:
           Chromosome undetermined scaffold_164, whole genome
           shotgun sequence - Paramecium tetraurelia
          Length = 440

 Score = 34.3 bits (75), Expect = 4.3
 Identities = 18/58 (31%), Positives = 37/58 (63%), Gaps = 5/58 (8%)
 Frame = +2

Query: 134 RTMISEMQLVVSINDTILHTLTNEIKSGQN-----NVNALQEFQKDVNLLLTKMIGDL 292
           + ++ +++LV+SI+DT+L+ L+  +KS +N      ++ +Q F +  N++ TK I  L
Sbjct: 221 KQIVDQIKLVLSISDTLLNKLSLIVKSAKNQTLIQQISLVQNFLQHNNVIYTKCIAIL 278


>UniRef50_Q6FME9 Cluster: DNA replication regulator SLD2; n=1;
           Candida glabrata|Rep: DNA replication regulator SLD2 -
           Candida glabrata (Yeast) (Torulopsis glabrata)
          Length = 350

 Score = 33.5 bits (73), Expect = 7.5
 Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
 Frame = +2

Query: 218 QNNVNALQEFQKDVNLLLTKMIGDLLHSGNNEMVEDEYCSTDDDQP-PISPKKTRK*NLV 394
           +N+    ++  K++  L ++ + + L   +NE  E+E       +P P+  KK +K NLV
Sbjct: 269 ENDRTIKKDLHKELLKLKSRKVKEFLGKEDNEPSEEEEEEQQKSEPLPVKKKKPKKYNLV 328

Query: 395 QTNF 406
             NF
Sbjct: 329 SNNF 332


>UniRef50_UPI00005F9318 Cluster: hypothetical protein
           YfreA_01001976; n=1; Yersinia frederiksenii ATCC
           33641|Rep: hypothetical protein YfreA_01001976 -
           Yersinia frederiksenii ATCC 33641
          Length = 347

 Score = 33.1 bits (72), Expect = 9.9
 Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 9/70 (12%)
 Frame = +2

Query: 146 SEMQLVVSINDTILHTLTNEIKSGQNNVNALQEFQKDV---------NLLLTKMIGDLLH 298
           S  + V S  D++ H  T  +KS + N     +  KDV         ++LLT +  DL+ 
Sbjct: 213 SAAETVRSERDSLEHAQTQRLKSTEKNTKRFADMIKDVFDGKPSKDASMLLTALSNDLVL 272

Query: 299 SGNNEMVEDE 328
           S  NE V+D+
Sbjct: 273 STTNEKVDDK 282


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 651,613,616
Number of Sequences: 1657284
Number of extensions: 10766780
Number of successful extensions: 21225
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 20616
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21209
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 81571813589
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)