Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP17_F_F13
         (899 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC553.09c |spb70|pol12|DNA polymerase alpha B-subunit|Schizosa...    28   2.1  
SPBC2A9.08c |sec22||SNARE Sec22|Schizosaccharomyces pombe|chr 2|...    26   6.3  
SPAC6C3.06c |||P-type ATPase, calcium transporting|Schizosacchar...    26   8.4  

>SPCC553.09c |spb70|pol12|DNA polymerase alpha
           B-subunit|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 574

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +2

Query: 98  LAANLSCFTHRERTMISEMQLVVSINDTILHTLTNEI 208
           L +N  CF +     I+++   VS ND +LHT   E+
Sbjct: 413 LPSNFKCFPNPCMFSINDVVFGVSTNDILLHTSREEL 449


>SPBC2A9.08c |sec22||SNARE Sec22|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 209

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = +2

Query: 221 NNVNALQEFQKDVNLLLTKMIGDLLHSGNN 310
           +N++ L    KDV  ++TK I DLL+ G++
Sbjct: 126 DNLDKLNTELKDVTRVMTKNIEDLLYRGDS 155


>SPAC6C3.06c |||P-type ATPase, calcium
           transporting|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1033

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -3

Query: 426 KQVMFYSKLVCTKFYFLVFLGLIGGWSSSVEQYSS 322
           K++ FYSK++CT F  ++ +GL        + Y S
Sbjct: 315 KEINFYSKILCT-FVLVLSIGLTFSHGIKTDWYIS 348


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,872,389
Number of Sequences: 5004
Number of extensions: 51384
Number of successful extensions: 81
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 454497130
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)