Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP17_F_F11
(910 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 42 6e-04
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 42 6e-04
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 42 6e-04
Z78013-1|CAB01425.3| 1140|Caenorhabditis elegans Hypothetical pr... 31 0.86
U55366-2|AAA97981.1| 156|Caenorhabditis elegans Hypothetical pr... 31 1.1
AC024809-7|AAF59540.1| 315|Caenorhabditis elegans Hypothetical ... 25 2.5
Z81053-1|CAB02877.1| 385|Caenorhabditis elegans Hypothetical pr... 29 4.6
U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical pr... 29 4.6
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 23 9.1
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 23 9.1
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 41.9 bits (94), Expect = 6e-04
Identities = 30/94 (31%), Positives = 32/94 (34%), Gaps = 5/94 (5%)
Frame = -3
Query: 623 LXPXLGGXXXPPPPXPXXXPCFFWGXG-----GGAPXXXXXXXXXXXXXXXGKXPPPPPX 459
L P GG PPPP P P G GG P PPPPP
Sbjct: 719 LPPITGGP--PPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPP 776
Query: 458 XGGXKKXXGGGAPXXXPGLXXXXXPXXPPFXXKK 357
GG K GG P PG+ P P + K
Sbjct: 777 PGGFK---GGPPPPPPPGMFAPMAPVIPDYLPPK 807
Score = 32.3 bits (70), Expect = 0.49
Identities = 16/41 (39%), Positives = 16/41 (39%)
Frame = -3
Query: 476 PPPPPXXGGXKKXXGGGAPXXXPGLXXXXXPXXPPFXXKKG 354
PPPPP GG GG P P P PP KG
Sbjct: 742 PPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKG 782
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 41.9 bits (94), Expect = 6e-04
Identities = 30/94 (31%), Positives = 32/94 (34%), Gaps = 5/94 (5%)
Frame = -3
Query: 623 LXPXLGGXXXPPPPXPXXXPCFFWGXG-----GGAPXXXXXXXXXXXXXXXGKXPPPPPX 459
L P GG PPPP P P G GG P PPPPP
Sbjct: 719 LPPITGGP--PPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPP 776
Query: 458 XGGXKKXXGGGAPXXXPGLXXXXXPXXPPFXXKK 357
GG K GG P PG+ P P + K
Sbjct: 777 PGGFK---GGPPPPPPPGMFAPMAPVIPDYLPPK 807
Score = 32.3 bits (70), Expect = 0.49
Identities = 16/41 (39%), Positives = 16/41 (39%)
Frame = -3
Query: 476 PPPPPXXGGXKKXXGGGAPXXXPGLXXXXXPXXPPFXXKKG 354
PPPPP GG GG P P P PP KG
Sbjct: 742 PPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKG 782
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 41.9 bits (94), Expect = 6e-04
Identities = 30/94 (31%), Positives = 32/94 (34%), Gaps = 5/94 (5%)
Frame = -3
Query: 623 LXPXLGGXXXPPPPXPXXXPCFFWGXG-----GGAPXXXXXXXXXXXXXXXGKXPPPPPX 459
L P GG PPPP P P G GG P PPPPP
Sbjct: 302 LPPITGGP--PPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPP 359
Query: 458 XGGXKKXXGGGAPXXXPGLXXXXXPXXPPFXXKK 357
GG K GG P PG+ P P + K
Sbjct: 360 PGGFK---GGPPPPPPPGMFAPMAPVIPDYLPPK 390
Score = 32.3 bits (70), Expect = 0.49
Identities = 16/41 (39%), Positives = 16/41 (39%)
Frame = -3
Query: 476 PPPPPXXGGXKKXXGGGAPXXXPGLXXXXXPXXPPFXXKKG 354
PPPPP GG GG P P P PP KG
Sbjct: 325 PPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKG 365
>Z78013-1|CAB01425.3| 1140|Caenorhabditis elegans Hypothetical
protein F15B9.4 protein.
Length = 1140
Score = 31.5 bits (68), Expect = 0.86
Identities = 29/114 (25%), Positives = 32/114 (28%), Gaps = 4/114 (3%)
Frame = -3
Query: 644 PXXXGGXLXPXLGGXXXPPPPXPXXXPCFFWGXGGGAPXXXXXXXXXXXXXXXGKXPPPP 465
P L P + PPPP P G AP PPPP
Sbjct: 472 PPGPPSSLLPLINTNAPPPPPMP--------SINGHAPNPPPPPPLLGIAPMSTNAPPPP 523
Query: 464 PXXGGXKKXXGGGAPXXXP--GLXXXXXPXXPPFXXK--KGFFSXXFXGGGXPP 315
P G G P P G+ P PP KG + G PP
Sbjct: 524 PMPGMAPLSTGAPTPPPPPPVGMANGGPPPPPPLPLDLLKGAVAGLKSVPGGPP 577
>U55366-2|AAA97981.1| 156|Caenorhabditis elegans Hypothetical
protein F41F3.3 protein.
Length = 156
Score = 31.1 bits (67), Expect = 1.1
Identities = 24/68 (35%), Positives = 24/68 (35%)
Frame = -3
Query: 608 GGXXXPPPPXPXXXPCFFWGXGGGAPXXXXXXXXXXXXXXXGKXPPPPPXXGGXKKXXGG 429
GG PPP P PC G GG A G PPP P GG GG
Sbjct: 25 GGCGCAPPP-PPPSPCGCGGGGGLALPQLPPLSLPSLGGGGGCCPPPAPACGGG--CGGG 81
Query: 428 GAPXXXPG 405
AP G
Sbjct: 82 VAPAPIGG 89
>AC024809-7|AAF59540.1| 315|Caenorhabditis elegans Hypothetical
protein Y53G8AR.9 protein.
Length = 315
Score = 25.0 bits (52), Expect(2) = 2.5
Identities = 12/35 (34%), Positives = 14/35 (40%)
Frame = -3
Query: 554 WGXGGGAPXXXXXXXXXXXXXXXGKXPPPPPXXGG 450
+G GGG G+ PPPPP GG
Sbjct: 186 FGPGGGGGGMGGGGGSGGSGGGSGRFPPPPPPYGG 220
Score = 23.4 bits (48), Expect(2) = 2.5
Identities = 7/12 (58%), Positives = 9/12 (75%)
Frame = -3
Query: 476 PPPPPXXGGXKK 441
PPPPP GG ++
Sbjct: 213 PPPPPYGGGGRR 224
>Z81053-1|CAB02877.1| 385|Caenorhabditis elegans Hypothetical
protein E02A10.2 protein.
Length = 385
Score = 29.1 bits (62), Expect = 4.6
Identities = 11/18 (61%), Positives = 11/18 (61%)
Frame = -1
Query: 478 PPPPPPXXGEXKXGXGGG 425
PPPPPP G G GGG
Sbjct: 54 PPPPPPACGGGCGGGGGG 71
Score = 29.1 bits (62), Expect = 4.6
Identities = 11/18 (61%), Positives = 11/18 (61%)
Frame = -1
Query: 478 PPPPPPXXGEXKXGXGGG 425
PPPPPP G G GGG
Sbjct: 111 PPPPPPACGGGCGGGGGG 128
>U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical
protein R04E5.8a protein.
Length = 997
Score = 29.1 bits (62), Expect = 4.6
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = +2
Query: 626 PPPXXAXXQXKXXXSXXPPPPPPQKXR 706
PPP + + S PPPPPP+ R
Sbjct: 122 PPPPPPPRKSRAGGSSPPPPPPPRVPR 148
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 23.4 bits (48), Expect(2) = 9.1
Identities = 8/13 (61%), Positives = 8/13 (61%)
Frame = +2
Query: 677 PPPPPPQKXRXXG 715
PPPPPP R G
Sbjct: 307 PPPPPPPPGRTPG 319
Score = 23.0 bits (47), Expect(2) = 9.1
Identities = 9/23 (39%), Positives = 9/23 (39%)
Frame = +2
Query: 626 PPPXXAXXQXKXXXSXXPPPPPP 694
PPP Q P PPPP
Sbjct: 255 PPPLMGMAQSGYQGQYPPVPPPP 277
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 23.4 bits (48), Expect(2) = 9.1
Identities = 8/13 (61%), Positives = 8/13 (61%)
Frame = +2
Query: 677 PPPPPPQKXRXXG 715
PPPPPP R G
Sbjct: 297 PPPPPPPPGRTPG 309
Score = 23.0 bits (47), Expect(2) = 9.1
Identities = 9/23 (39%), Positives = 9/23 (39%)
Frame = +2
Query: 626 PPPXXAXXQXKXXXSXXPPPPPP 694
PPP Q P PPPP
Sbjct: 245 PPPLMGMAQSGYQGQYPPVPPPP 267
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.312 0.150 0.498
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,488,491
Number of Sequences: 27780
Number of extensions: 228878
Number of successful extensions: 2246
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 477
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1737
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2318293978
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
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