Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP17_F_F10
         (872 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC622.16c |epe1||Jmjc domain chromatin associated protein Epe1...    27   4.6  
SPAPJ698.03c |prp12|sap130|U2 snRNP-associated protein Sap130 |S...    26   8.1  
SPAC222.07c |hri2||eIF2 alpha kinase Hri2|Schizosaccharomyces po...    26   8.1  
SPBC31F10.08 |mde2||Mde2 protein|Schizosaccharomyces pombe|chr 2...    26   8.1  

>SPCC622.16c |epe1||Jmjc domain chromatin associated protein
            Epe1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 948

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +1

Query: 337  RKEMLNDKNRRIFKQDVTLYERLQHLRIGEKW 432
            + E +  K RRI K +  +Y+   H  + EKW
Sbjct: 907  KAENVGIKKRRIMKNENNIYDFEDHSPVREKW 938


>SPAPJ698.03c |prp12|sap130|U2 snRNP-associated protein Sap130
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1206

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = +2

Query: 203 LNQNIYGVLKKILPLR 250
           LNQN +G+++ + PLR
Sbjct: 60  LNQNCFGIIRNVAPLR 75


>SPAC222.07c |hri2||eIF2 alpha kinase Hri2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 639

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 10/28 (35%), Positives = 19/28 (67%)
 Frame = +1

Query: 331 EMRKEMLNDKNRRIFKQDVTLYERLQHL 414
           E + +++ D+N+R+ +Q   L  R+QHL
Sbjct: 609 ETQMKLIMDENQRLREQIAVLRSRIQHL 636


>SPBC31F10.08 |mde2||Mde2 protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 209

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +1

Query: 274 FPYLSEAESFGHTKALGKHEMRKEMLNDKNRRIFKQ 381
           F  +S  E+F  +K L K + R   L DKN +  K+
Sbjct: 38  FDIISNKETFSESKQLKKAKSRNVTLVDKNTKADKR 73


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,208,865
Number of Sequences: 5004
Number of extensions: 34595
Number of successful extensions: 84
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 436477420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)