Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP17_F_F09
         (894 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1271.05c |||zinc finger protein zf-AN1 type|Schizosaccharomy...    29   0.89 
SPAC9G1.06c |cyk3||cytokinesis protein Cyk3|Schizosaccharomyces ...    28   2.1  
SPAC11E3.12 |||conserved eukaryotic protein|Schizosaccharomyces ...    26   8.3  

>SPBC1271.05c |||zinc finger protein zf-AN1 type|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 215

 Score = 29.1 bits (62), Expect = 0.89
 Identities = 18/67 (26%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
 Frame = -2

Query: 686 HF-PGQPRHSVTRRVAFERRRAQVEEVLQ*PAVSRGTHFLPSLASESGGEHSQWKLPGSL 510
           HF P  P H+ T  V+  ++ + +      P++S+     P L SE   + +    P + 
Sbjct: 93  HFSPLTPNHASTEAVSNFKQSSTI------PSISKSNLTNPPLESEKSSDKALLTRPATS 146

Query: 509 TQRCSHP 489
            +RC HP
Sbjct: 147 RRRCCHP 153


>SPAC9G1.06c |cyk3||cytokinesis protein Cyk3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 886

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 35/156 (22%), Positives = 63/156 (40%), Gaps = 3/156 (1%)
 Frame = +2

Query: 290 HTNTSLDGVFRNQWSRAV*TCVSKHAKCRERVCGVPATLGSSSTRKAIPSKSS---RIVL 460
           H NT+  G+F + +   +     +      R         +SS R + P KSS    I  
Sbjct: 48  HINTNTQGIFPSNFVHCLDIPTVRPGSSMSRT-------SASSFRYSSPQKSSIDTPITS 100

Query: 461 M*TSVRRTMVGVSNAASMILEASTANAHRRSH*LVMARNVSHGIPLAIAEPLPLVRASSR 640
               +   +VG SNA +     S +  H++SH ++ +   S  +  +++ P       S 
Sbjct: 101 SDQGLTPDLVGSSNALNKPTRESDSLKHQKSHPMLNSLGSSLSLKKSVSRP------PSS 154

Query: 641 MLRAV*HCDVVDQESETAERSTARDTRRLKKVVGAP 748
           M R   + DV  +   TA+  +  D + L +   +P
Sbjct: 155 MSRT--NLDVSSRWDNTADNDSQIDAQDLSRSTPSP 188


>SPAC11E3.12 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 162

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +1

Query: 337 CSLNLCEQACEVQGESMWCS 396
           C+  +C+QA E QG S W S
Sbjct: 88  CNSWMCQQAAEEQGNSNWDS 107


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,540,862
Number of Sequences: 5004
Number of extensions: 73892
Number of successful extensions: 167
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 450492750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)