Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP17_F_F05
(878 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U23139-15|AAK31488.1| 387|Caenorhabditis elegans Hypothetical p... 228 3e-60
Z92828-1|CAB07337.1| 512|Caenorhabditis elegans Hypothetical pr... 29 4.4
AY204196-1|AAO39199.1| 412|Caenorhabditis elegans nuclear recep... 29 4.4
AC006777-2|AAK72308.3| 326|Caenorhabditis elegans Nuclear hormo... 29 4.4
AC006777-1|ABB51174.1| 424|Caenorhabditis elegans Nuclear hormo... 29 4.4
Z73098-4|CAD44145.1| 565|Caenorhabditis elegans Hypothetical pr... 29 5.8
Z73098-3|CAD44144.1| 501|Caenorhabditis elegans Hypothetical pr... 29 5.8
Z67880-1|CAA91794.1| 256|Caenorhabditis elegans Hypothetical pr... 29 5.8
U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical pr... 28 7.7
AF016416-8|AAB65271.1| 388|Caenorhabditis elegans Hypothetical ... 28 7.7
>U23139-15|AAK31488.1| 387|Caenorhabditis elegans Hypothetical
protein F13H8.7 protein.
Length = 387
Score = 228 bits (558), Expect = 3e-60
Identities = 116/223 (52%), Positives = 144/223 (64%), Gaps = 2/223 (0%)
Frame = +1
Query: 115 LESIINNNLTGRDLEEFNRIHFGRRNNLEIKLKESSIXXXXXXXXXXXXXXF--PAKDEQ 288
+E+ + L G L+E RI +GR L+ SSI + A+ EQ
Sbjct: 11 VETALAEKLDGVSLDEVERILYGRPYRA---LEISSIAEKLAQDGDFQLSGYIVDAQKEQ 67
Query: 289 TRPPRIVKVGIIQHSIAVPTDRPVNEQKKAIFNKVKKIIDVAGQEGVNIICFQELWNMPF 468
TR PR+V+V IQ+ I PT V EQ+ AI +V +I+ A G N+I QE W MPF
Sbjct: 68 TRAPRLVRVAAIQNKIHRPTTDSVVEQRDAIHQRVGAMIEAAASAGANVIGLQEAWTMPF 127
Query: 469 AFCTREKQPWCEFAESAEDGPTTTFLRELAIKYAMVIVSSILERDEKHSDILWNTAVVIS 648
AFCTRE+ PW EFAES GPTT FL +LA+K+ +VI+S ILERDE+ D++WNTAVVIS
Sbjct: 128 AFCTRERLPWTEFAESVYTGPTTQFLSKLAVKHDIVIISPILERDEEKDDVIWNTAVVIS 187
Query: 649 DTGNVIGKHRKNHIPRVGDFNESNYYMEGNTGHPVFATRYGKI 777
TG VIG+ RKNHIPRVGDFNES YYME GHPVF T+YG+I
Sbjct: 188 HTGRVIGRSRKNHIPRVGDFNESTYYMESTLGHPVFETKYGRI 230
Score = 58.4 bits (135), Expect = 6e-09
Identities = 22/34 (64%), Positives = 27/34 (79%)
Frame = +2
Query: 773 RSRVNICFGRHHVLNWMMFGQNGAEXVFNPSATI 874
R +NIC+GRHH NWMM+ NGAE +FNPSAT+
Sbjct: 229 RIGINICYGRHHPQNWMMYALNGAEIIFNPSATV 262
>Z92828-1|CAB07337.1| 512|Caenorhabditis elegans Hypothetical
protein C37A5.1 protein.
Length = 512
Score = 29.1 bits (62), Expect = 4.4
Identities = 14/50 (28%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Frame = -1
Query: 677 RCFPITFPVSLMTTAVFQSMSECFSSLSNIEDT-ITIAYLMASSRRKVVV 531
+C P+TF ++ T + F+++ IE+T I IA L+ + V++
Sbjct: 75 KCVPLTFMLAFFVTIIVDRWKNMFANIGFIENTAIAIATLVKGTEGDVLL 124
>AY204196-1|AAO39199.1| 412|Caenorhabditis elegans nuclear receptor
NHR-110 protein.
Length = 412
Score = 29.1 bits (62), Expect = 4.4
Identities = 12/30 (40%), Positives = 20/30 (66%)
Frame = -3
Query: 825 IIQFKTWCRPKQMFTRDLAVSGRKYRMAGV 736
+++ K R K+MF R+L + KY++AGV
Sbjct: 365 LLRIKQLMRVKEMFLRNLNIRMEKYKIAGV 394
>AC006777-2|AAK72308.3| 326|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 110, isoform a protein.
Length = 326
Score = 29.1 bits (62), Expect = 4.4
Identities = 12/30 (40%), Positives = 20/30 (66%)
Frame = -3
Query: 825 IIQFKTWCRPKQMFTRDLAVSGRKYRMAGV 736
+++ K R K+MF R+L + KY++AGV
Sbjct: 279 LLRIKQLMRVKEMFLRNLNIRMEKYKIAGV 308
>AC006777-1|ABB51174.1| 424|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 110, isoform b protein.
Length = 424
Score = 29.1 bits (62), Expect = 4.4
Identities = 12/30 (40%), Positives = 20/30 (66%)
Frame = -3
Query: 825 IIQFKTWCRPKQMFTRDLAVSGRKYRMAGV 736
+++ K R K+MF R+L + KY++AGV
Sbjct: 377 LLRIKQLMRVKEMFLRNLNIRMEKYKIAGV 406
>Z73098-4|CAD44145.1| 565|Caenorhabditis elegans Hypothetical
protein T21C9.3b protein.
Length = 565
Score = 28.7 bits (61), Expect = 5.8
Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = +1
Query: 373 KAIFNKVKKIIDVAGQEGVNIICFQELWNMP-FAFCTREKQPWCEF 507
K +F+ ++ D + +NI+ F E MP FC +Q W F
Sbjct: 46 KDVFDLFEEYFDYPKESDINIV-FNESMTMPNVTFCMSRQQAWSHF 90
>Z73098-3|CAD44144.1| 501|Caenorhabditis elegans Hypothetical
protein T21C9.3a protein.
Length = 501
Score = 28.7 bits (61), Expect = 5.8
Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = +1
Query: 373 KAIFNKVKKIIDVAGQEGVNIICFQELWNMP-FAFCTREKQPWCEF 507
K +F+ ++ D + +NI+ F E MP FC +Q W F
Sbjct: 46 KDVFDLFEEYFDYPKESDINIV-FNESMTMPNVTFCMSRQQAWSHF 90
>Z67880-1|CAA91794.1| 256|Caenorhabditis elegans Hypothetical
protein C34E7.3 protein.
Length = 256
Score = 28.7 bits (61), Expect = 5.8
Identities = 15/49 (30%), Positives = 28/49 (57%)
Frame = -1
Query: 551 SRRKVVVGPSSADSANSHHGCFSLVQNAKGIFHNSWKQMMLTPSWPATS 405
SR K+ +S+ + HG + +V+ AK F + +++ +TPS P T+
Sbjct: 197 SRMKIRKDSNSSKKEDMEHGDWWIVRVAKMGFESCFQRRRITPSPPPTN 245
>U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical protein
C41A3.1 protein.
Length = 7829
Score = 28.3 bits (60), Expect = 7.7
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Frame = +2
Query: 731 KVTPAILYLRPDTARSRVNICFGRHHVL--NWMM 826
K TP + + D SR++I F +HH+L W M
Sbjct: 6737 KSTPLRVRVAEDCDNSRIHIVFNQHHILTDGWSM 6770
>AF016416-8|AAB65271.1| 388|Caenorhabditis elegans Hypothetical
protein F29A7.1 protein.
Length = 388
Score = 28.3 bits (60), Expect = 7.7
Identities = 9/35 (25%), Positives = 18/35 (51%)
Frame = +1
Query: 625 WNTAVVISDTGNVIGKHRKNHIPRVGDFNESNYYM 729
WN + + D ++ + H+ R GD+ NY++
Sbjct: 266 WNKKIAMKDVPFIVYSPQFEHVIRGGDWENENYFL 300
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,894,281
Number of Sequences: 27780
Number of extensions: 439246
Number of successful extensions: 1367
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1280
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1366
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2213393798
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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