Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP17_F_F04
(852 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 50 4e-07
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 37 0.003
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 36 0.007
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 35 0.013
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 34 0.022
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 34 0.022
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 31 0.16
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 30 0.36
SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual 29 0.84
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 28 1.9
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 27 2.6
SPCC338.17c |rad21||kleisin|Schizosaccharomyces pombe|chr 3|||Ma... 27 2.6
SPAC17G8.03c |dpb3||DNA polymerase epsilon subunit Dpb3|Schizosa... 26 5.9
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 50.0 bits (114), Expect = 4e-07
Identities = 25/59 (42%), Positives = 34/59 (57%)
Frame = +2
Query: 647 ETYRKFETANLRKYVLDNVLKAGYRKPTPIQKNAIPNHNXXAXILMGCAXTGSG*TGXF 823
E +F + L ++L N+ +GY +PTP+QKN+IP LM CA TGSG T F
Sbjct: 166 EPVNEFTSPPLNSHLLQNIKLSGYTQPTPVQKNSIPIVTSGRD-LMACAQTGSGKTAGF 223
Score = 31.1 bits (67), Expect = 0.21
Identities = 12/19 (63%), Positives = 17/19 (89%)
Frame = +3
Query: 579 ISSGINFDKFDHIAVKVSG 635
+S+GINF+K+D I V+VSG
Sbjct: 144 VSTGINFEKYDDIPVEVSG 162
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 37.1 bits (82), Expect = 0.003
Identities = 21/51 (41%), Positives = 27/51 (52%)
Frame = +2
Query: 662 FETANLRKYVLDNVLKAGYRKPTPIQKNAIPNHNXXAXILMGCAXTGSG*T 814
FE A YVL V + G+ PTPIQ+ A P ++G + TGSG T
Sbjct: 124 FEEAGFPNYVLKEVKQLGFEAPTPIQQQAWP-MAMSGRDMVGISATGSGKT 173
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 35.9 bits (79), Expect = 0.007
Identities = 19/51 (37%), Positives = 31/51 (60%)
Frame = +2
Query: 662 FETANLRKYVLDNVLKAGYRKPTPIQKNAIPNHNXXAXILMGCAXTGSG*T 814
F++ N+ K++ + V G++K TP+Q NAIP +++ A TGSG T
Sbjct: 3 FQSINIDKWLKNAVAAQGFKKMTPVQANAIPLFLKNKDLVVE-AVTGSGKT 52
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 35.1 bits (77), Expect = 0.013
Identities = 20/62 (32%), Positives = 33/62 (53%)
Frame = +2
Query: 638 ESSETYRKFETANLRKYVLDNVLKAGYRKPTPIQKNAIPNHNXXAXILMGCAXTGSG*TG 817
+++E + F+ + + + K G++ PTPIQ+ AIP ++ G A TGSG T
Sbjct: 40 QNNEAPKTFKELGVIDELCEACEKLGFKTPTPIQQEAIPVVLNKRDVI-GLAQTGSGKTA 98
Query: 818 XF 823
F
Sbjct: 99 AF 100
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 34.3 bits (75), Expect = 0.022
Identities = 19/55 (34%), Positives = 31/55 (56%)
Frame = +2
Query: 659 KFETANLRKYVLDNVLKAGYRKPTPIQKNAIPNHNXXAXILMGCAXTGSG*TGXF 823
+FE L++ +L + +AG+ +P+PIQ+ +IP IL A G+G T F
Sbjct: 45 EFEDYYLKRELLMGIFEAGFERPSPIQEESIPIALSGRDIL-ARAKNGTGKTAAF 98
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 34.3 bits (75), Expect = 0.022
Identities = 21/50 (42%), Positives = 28/50 (56%)
Frame = +2
Query: 674 NLRKYVLDNVLKAGYRKPTPIQKNAIPNHNXXAXILMGCAXTGSG*TGXF 823
+L +L ++ KAG+ KP PIQ IP + I+ G A TGSG T F
Sbjct: 128 SLSPEMLGSLSKAGFSKPMPIQSLVIPEASIGFDII-GKADTGSGKTLAF 176
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 31.5 bits (68), Expect = 0.16
Identities = 18/37 (48%), Positives = 20/37 (54%)
Frame = +2
Query: 713 GYRKPTPIQKNAIPNHNXXAXILMGCAXTGSG*TGXF 823
GY KPT IQ AIP ++ G A TGSG T F
Sbjct: 437 GYEKPTSIQAQAIPAITSGRDVI-GVAKTGSGKTIAF 472
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 30.3 bits (65), Expect = 0.36
Identities = 20/61 (32%), Positives = 28/61 (45%)
Frame = +2
Query: 641 SSETYRKFETANLRKYVLDNVLKAGYRKPTPIQKNAIPNHNXXAXILMGCAXTGSG*TGX 820
S+ KF L + + + + G+ T IQK +IP +L G A TGSG T
Sbjct: 84 STSDIEKFSDLQLSENIQKAIKEMGFETMTEIQKRSIPPLLAGRDVL-GAAKTGSGKTLA 142
Query: 821 F 823
F
Sbjct: 143 F 143
>SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1202
Score = 29.1 bits (62), Expect = 0.84
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = +2
Query: 647 ETYRKFETANLRKYVLDNVLKAGYRKPTPIQKNAIPNH 760
E Y+ E+ L +V DN LKA I++N P +
Sbjct: 753 ENYKSLESIGLTSFVKDNKLKASKELQKLIEENVFPKN 790
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 27.9 bits (59), Expect = 1.9
Identities = 15/57 (26%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Frame = +2
Query: 656 RKFETANLRKYVLDNVLKAGYRKPTPIQKNAIP-NHNXXAXILMGCAXTGSG*TGXF 823
+ FE L+ +L + ++KP+ IQ+ A+P + ++G + +G+G T F
Sbjct: 114 KSFEELELKPELLKGIYSMKFQKPSKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAF 170
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 27.5 bits (58), Expect = 2.6
Identities = 17/62 (27%), Positives = 27/62 (43%)
Frame = +2
Query: 638 ESSETYRKFETANLRKYVLDNVLKAGYRKPTPIQKNAIPNHNXXAXILMGCAXTGSG*TG 817
E FE NL++ +L + GY P+ +Q AI ++ A +G+G T
Sbjct: 15 EDVNAVSSFEEMNLKEDLLRGIYAYGYETPSAVQSRAIIQICKGRDVI-AQAQSGTGKTA 73
Query: 818 XF 823
F
Sbjct: 74 TF 75
>SPCC338.17c |rad21||kleisin|Schizosaccharomyces pombe|chr
3|||Manual
Length = 628
Score = 27.5 bits (58), Expect = 2.6
Identities = 13/24 (54%), Positives = 13/24 (54%)
Frame = -1
Query: 567 RFPSHHLLVLEAHRLPASSFPRFP 496
R PS LE H LP SS P FP
Sbjct: 146 RTPSRSSNTLELHSLPISSSPSFP 169
>SPAC17G8.03c |dpb3||DNA polymerase epsilon subunit
Dpb3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 199
Score = 26.2 bits (55), Expect = 5.9
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
Frame = +3
Query: 471 NDYEDNEIGENGETKKPVTYVPPEPTNDETEI---FSSTISSGINFDKFDHIAVKVSGE 638
N ++ EI ++ E+ T V EPT +ETE +++ G DK A SG+
Sbjct: 140 NTVKEEEIEKDDESATTETPVKEEPTGEETEADHEEKASVDHGNFSDKTTSEASSASGD 198
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,580,832
Number of Sequences: 5004
Number of extensions: 48382
Number of successful extensions: 161
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 422462090
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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