Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP17_F_F04
(852 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024810-3|AAU20831.1| 660|Caenorhabditis elegans Vasa- and bel... 49 5e-06
AC024810-2|AAK68520.1| 644|Caenorhabditis elegans Vasa- and bel... 49 5e-06
AC024810-1|AAF60764.1| 641|Caenorhabditis elegans Vasa- and bel... 49 5e-06
AC024859-14|AAY43989.1| 643|Caenorhabditis elegans Hypothetical... 47 1e-05
U62772-1|AAB04136.1| 763|Caenorhabditis elegans RNA helicase pr... 46 5e-05
U60449-1|AAB03510.1| 974|Caenorhabditis elegans GLH-2 protein. 46 5e-05
U60194-1|AAB03337.1| 974|Caenorhabditis elegans RNA helicase GL... 46 5e-05
L19948-1|AAC27384.1| 763|Caenorhabditis elegans RNA helicase pr... 46 5e-05
AF000197-1|AAB52901.2| 763|Caenorhabditis elegans Germ-line hel... 46 5e-05
AC006625-11|AAK68269.1| 974|Caenorhabditis elegans Germ-line he... 46 5e-05
AC025726-23|AAK73934.1| 763|Caenorhabditis elegans Hypothetical... 39 0.004
U13070-1|AAK67224.1| 730|Caenorhabditis elegans Hypothetical pr... 39 0.005
AF079509-1|AAC28388.1| 720|Caenorhabditis elegans germline RNA ... 38 0.009
AF003145-4|AAB57719.1| 720|Caenorhabditis elegans Germ-line hel... 38 0.009
Z81449-4|CAB03765.1| 811|Caenorhabditis elegans Hypothetical pr... 36 0.028
AC024753-1|AAF60456.1| 732|Caenorhabditis elegans Hypothetical ... 36 0.048
Z29115-1|CAA82362.1| 489|Caenorhabditis elegans Hypothetical pr... 35 0.064
AC006661-5|AAF39890.2| 488|Caenorhabditis elegans Hypothetical ... 32 0.60
AC006661-4|ABB88208.1| 561|Caenorhabditis elegans Hypothetical ... 32 0.60
Z82275-3|CAL44962.1| 478|Caenorhabditis elegans Hypothetical pr... 31 1.0
Z82265-8|CAB05169.2| 478|Caenorhabditis elegans Hypothetical pr... 31 1.0
AF045641-1|AAK68386.1| 970|Caenorhabditis elegans Hypothetical ... 31 1.0
U80447-1|AAB37806.1| 746|Caenorhabditis elegans Hypothetical pr... 30 1.8
AC024844-2|AAK29954.2| 399|Caenorhabditis elegans Hypothetical ... 30 1.8
AF039720-12|AAB96704.1| 399|Caenorhabditis elegans Hypothetical... 30 2.4
Z75546-3|CAA99891.1| 581|Caenorhabditis elegans Hypothetical pr... 29 3.2
AC024876-4|AAU05555.1| 825|Caenorhabditis elegans Hypothetical ... 29 4.2
AC024876-3|AAU05556.1| 871|Caenorhabditis elegans Hypothetical ... 29 4.2
AF025451-3|AAB71200.2| 634|Caenorhabditis elegans Hypothetical ... 29 5.5
AC006733-9|AAF60491.2| 3901|Caenorhabditis elegans Hypothetical ... 28 7.3
Z12116-1|CAA78102.1| 402|Caenorhabditis elegans protein ( C.ele... 28 9.7
U13876-3|AAA21170.1| 402|Caenorhabditis elegans Initiation fact... 28 9.7
>AC024810-3|AAU20831.1| 660|Caenorhabditis elegans Vasa- and
belle-like helicase protein1, isoform c protein.
Length = 660
Score = 48.8 bits (111), Expect = 5e-06
Identities = 25/54 (46%), Positives = 32/54 (59%)
Frame = +2
Query: 662 FETANLRKYVLDNVLKAGYRKPTPIQKNAIPNHNXXAXILMGCAXTGSG*TGXF 823
F A V++NV ++GY KPTP+QK++IP LM CA TGSG T F
Sbjct: 141 FNEAGFGPAVMENVNRSGYSKPTPVQKHSIPTLLANRD-LMSCAQTGSGKTAAF 193
Score = 40.3 bits (90), Expect = 0.002
Identities = 22/63 (34%), Positives = 35/63 (55%)
Frame = +3
Query: 471 NDYEDNEIGENGETKKPVTYVPPEPTNDETEIFSSTISSGINFDKFDHIAVKVSGENPPR 650
N++ D+ G N + + E+ +F T SGINFDK+++I V+VSG++ P
Sbjct: 78 NNFADSGNGFNNNGAESNQWGGAPAEYSESNLFHRT-DSGINFDKYENIPVEVSGDSVPA 136
Query: 651 PIE 659
IE
Sbjct: 137 AIE 139
>AC024810-2|AAK68520.1| 644|Caenorhabditis elegans Vasa- and
belle-like helicase protein1, isoform b protein.
Length = 644
Score = 48.8 bits (111), Expect = 5e-06
Identities = 25/54 (46%), Positives = 32/54 (59%)
Frame = +2
Query: 662 FETANLRKYVLDNVLKAGYRKPTPIQKNAIPNHNXXAXILMGCAXTGSG*TGXF 823
F A V++NV ++GY KPTP+QK++IP LM CA TGSG T F
Sbjct: 125 FNEAGFGPAVMENVNRSGYSKPTPVQKHSIPTLLANRD-LMSCAQTGSGKTAAF 177
Score = 38.7 bits (86), Expect = 0.005
Identities = 18/35 (51%), Positives = 26/35 (74%)
Frame = +3
Query: 555 ETEIFSSTISSGINFDKFDHIAVKVSGENPPRPIE 659
E+ +F T SGINFDK+++I V+VSG++ P IE
Sbjct: 90 ESNLFHRT-DSGINFDKYENIPVEVSGDSVPAAIE 123
>AC024810-1|AAF60764.1| 641|Caenorhabditis elegans Vasa- and
belle-like helicase protein1, isoform a protein.
Length = 641
Score = 48.8 bits (111), Expect = 5e-06
Identities = 25/54 (46%), Positives = 32/54 (59%)
Frame = +2
Query: 662 FETANLRKYVLDNVLKAGYRKPTPIQKNAIPNHNXXAXILMGCAXTGSG*TGXF 823
F A V++NV ++GY KPTP+QK++IP LM CA TGSG T F
Sbjct: 122 FNEAGFGPAVMENVNRSGYSKPTPVQKHSIPTLLANRD-LMSCAQTGSGKTAAF 174
Score = 40.3 bits (90), Expect = 0.002
Identities = 22/63 (34%), Positives = 35/63 (55%)
Frame = +3
Query: 471 NDYEDNEIGENGETKKPVTYVPPEPTNDETEIFSSTISSGINFDKFDHIAVKVSGENPPR 650
N++ D+ G N + + E+ +F T SGINFDK+++I V+VSG++ P
Sbjct: 59 NNFADSGNGFNNNGAESNQWGGAPAEYSESNLFHRT-DSGINFDKYENIPVEVSGDSVPA 117
Query: 651 PIE 659
IE
Sbjct: 118 AIE 120
>AC024859-14|AAY43989.1| 643|Caenorhabditis elegans Hypothetical
protein Y71H2AM.19 protein.
Length = 643
Score = 47.2 bits (107), Expect = 1e-05
Identities = 23/54 (42%), Positives = 32/54 (59%)
Frame = +2
Query: 662 FETANLRKYVLDNVLKAGYRKPTPIQKNAIPNHNXXAXILMGCAXTGSG*TGXF 823
F +L +++ +N+ AGY +PTP+QK +IP LM CA TGSG T F
Sbjct: 168 FSDLSLHEWIEENIKTAGYDRPTPVQKYSIPALQGGRD-LMSCAQTGSGKTAAF 220
Score = 39.5 bits (88), Expect = 0.003
Identities = 17/34 (50%), Positives = 26/34 (76%)
Frame = +3
Query: 555 ETEIFSSTISSGINFDKFDHIAVKVSGENPPRPI 656
E E+FS +S GINFDK++ I V+ +G++ P+PI
Sbjct: 133 EQELFSGQLS-GINFDKYEEIPVEATGDDVPQPI 165
>U62772-1|AAB04136.1| 763|Caenorhabditis elegans RNA helicase
protein.
Length = 763
Score = 45.6 bits (103), Expect = 5e-05
Identities = 26/56 (46%), Positives = 32/56 (57%)
Frame = +2
Query: 656 RKFETANLRKYVLDNVLKAGYRKPTPIQKNAIPNHNXXAXILMGCAXTGSG*TGXF 823
+ F ANL + + NV AGY K TPIQ+ A+P + I M CA TGSG T F
Sbjct: 341 KTFAEANLTETMQKNVAHAGYSKTTPIQQYALPLVHQGYDI-MACAQTGSGKTAAF 395
>U60449-1|AAB03510.1| 974|Caenorhabditis elegans GLH-2 protein.
Length = 974
Score = 45.6 bits (103), Expect = 5e-05
Identities = 26/59 (44%), Positives = 33/59 (55%)
Frame = +2
Query: 647 ETYRKFETANLRKYVLDNVLKAGYRKPTPIQKNAIPNHNXXAXILMGCAXTGSG*TGXF 823
+T + F ANL + + NV AGY K TPIQ+ +P + I M CA TGSG T F
Sbjct: 549 KTCKTFSEANLGETMKKNVAHAGYTKTTPIQQYTLPLIHQGHDI-MACAQTGSGKTAAF 606
Score = 33.5 bits (73), Expect = 0.20
Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Frame = +3
Query: 495 GENGETKKPVTYVPPEPTNDETEIFS-STISSGINFDKFDHIAVKVSGENPPRPIESSK 668
G GE K TYVP E +E +F+ IS G+ F+KF VK++ + P +++ K
Sbjct: 497 GAEGEGPK-ATYVPVEDNMEE--VFNMQKISEGLMFNKFFDAEVKITSDKKPVGVKTCK 552
>U60194-1|AAB03337.1| 974|Caenorhabditis elegans RNA helicase GLH-2
protein.
Length = 974
Score = 45.6 bits (103), Expect = 5e-05
Identities = 26/59 (44%), Positives = 33/59 (55%)
Frame = +2
Query: 647 ETYRKFETANLRKYVLDNVLKAGYRKPTPIQKNAIPNHNXXAXILMGCAXTGSG*TGXF 823
+T + F ANL + + NV AGY K TPIQ+ +P + I M CA TGSG T F
Sbjct: 549 KTCKTFSEANLGETMKKNVAHAGYTKTTPIQQYTLPLIHQGHDI-MACAQTGSGKTAAF 606
Score = 33.5 bits (73), Expect = 0.20
Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Frame = +3
Query: 495 GENGETKKPVTYVPPEPTNDETEIFS-STISSGINFDKFDHIAVKVSGENPPRPIESSK 668
G GE K TYVP E +E +F+ IS G+ F+KF VK++ + P +++ K
Sbjct: 497 GAEGEGPK-ATYVPVEDNMEE--VFNMQKISEGLMFNKFFDAEVKITSDKKPVGVKTCK 552
>L19948-1|AAC27384.1| 763|Caenorhabditis elegans RNA helicase
protein.
Length = 763
Score = 45.6 bits (103), Expect = 5e-05
Identities = 26/56 (46%), Positives = 32/56 (57%)
Frame = +2
Query: 656 RKFETANLRKYVLDNVLKAGYRKPTPIQKNAIPNHNXXAXILMGCAXTGSG*TGXF 823
+ F ANL + + NV AGY K TPIQ+ A+P + I M CA TGSG T F
Sbjct: 341 KTFAEANLTETMQKNVAHAGYSKTTPIQQYALPLVHQGYDI-MACAQTGSGKTAAF 395
>AF000197-1|AAB52901.2| 763|Caenorhabditis elegans Germ-line
helicase protein 1 protein.
Length = 763
Score = 45.6 bits (103), Expect = 5e-05
Identities = 26/56 (46%), Positives = 32/56 (57%)
Frame = +2
Query: 656 RKFETANLRKYVLDNVLKAGYRKPTPIQKNAIPNHNXXAXILMGCAXTGSG*TGXF 823
+ F ANL + + NV AGY K TPIQ+ A+P + I M CA TGSG T F
Sbjct: 341 KTFAEANLTETMQKNVAHAGYSKTTPIQQYALPLVHQGYDI-MACAQTGSGKTAAF 395
>AC006625-11|AAK68269.1| 974|Caenorhabditis elegans Germ-line
helicase protein 2 protein.
Length = 974
Score = 45.6 bits (103), Expect = 5e-05
Identities = 26/59 (44%), Positives = 33/59 (55%)
Frame = +2
Query: 647 ETYRKFETANLRKYVLDNVLKAGYRKPTPIQKNAIPNHNXXAXILMGCAXTGSG*TGXF 823
+T + F ANL + + NV AGY K TPIQ+ +P + I M CA TGSG T F
Sbjct: 549 KTCKTFSEANLGETMKKNVAHAGYTKTTPIQQYTLPLIHQGHDI-MACAQTGSGKTAAF 606
Score = 33.5 bits (73), Expect = 0.20
Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Frame = +3
Query: 495 GENGETKKPVTYVPPEPTNDETEIFS-STISSGINFDKFDHIAVKVSGENPPRPIESSK 668
G GE K TYVP E +E +F+ IS G+ F+KF VK++ + P +++ K
Sbjct: 497 GAEGEGPK-ATYVPVEDNMEE--VFNMQKISEGLMFNKFFDAEVKITSDKKPVGVKTCK 552
>AC025726-23|AAK73934.1| 763|Caenorhabditis elegans Hypothetical
protein Y71G12B.8 protein.
Length = 763
Score = 39.1 bits (87), Expect = 0.004
Identities = 23/54 (42%), Positives = 27/54 (50%)
Frame = +2
Query: 662 FETANLRKYVLDNVLKAGYRKPTPIQKNAIPNHNXXAXILMGCAXTGSG*TGXF 823
FE NL + +L AGY PTPIQ+ IP I CA TG+G T F
Sbjct: 150 FEQMNLSRQILKACSGAGYSDPTPIQQACIPVALTGKDI-CACAATGTGKTAAF 202
>U13070-1|AAK67224.1| 730|Caenorhabditis elegans Hypothetical
protein F01F1.7 protein.
Length = 730
Score = 38.7 bits (86), Expect = 0.005
Identities = 23/56 (41%), Positives = 29/56 (51%)
Frame = +2
Query: 656 RKFETANLRKYVLDNVLKAGYRKPTPIQKNAIPNHNXXAXILMGCAXTGSG*TGXF 823
R +E A V V + GY +PTPIQ+ AIP ++ G A TGSG T F
Sbjct: 301 RNWEEAGFPDEVYQAVKEIGYLEPTPIQRQAIPIGLQNRDVI-GVAETGSGKTAAF 355
>AF079509-1|AAC28388.1| 720|Caenorhabditis elegans germline RNA
helicase-3 protein.
Length = 720
Score = 37.9 bits (84), Expect = 0.009
Identities = 21/56 (37%), Positives = 31/56 (55%)
Frame = +2
Query: 656 RKFETANLRKYVLDNVLKAGYRKPTPIQKNAIPNHNXXAXILMGCAXTGSG*TGXF 823
+ F +++ + + NV +AGY + TPIQ+ +P IL CA TGSG T F
Sbjct: 298 KSFSDSDIPQSMRRNVERAGYTRTTPIQQYTLPLVADGKDIL-ACAQTGSGKTAAF 352
>AF003145-4|AAB57719.1| 720|Caenorhabditis elegans Germ-line
helicase protein 3 protein.
Length = 720
Score = 37.9 bits (84), Expect = 0.009
Identities = 21/56 (37%), Positives = 31/56 (55%)
Frame = +2
Query: 656 RKFETANLRKYVLDNVLKAGYRKPTPIQKNAIPNHNXXAXILMGCAXTGSG*TGXF 823
+ F +++ + + NV +AGY + TPIQ+ +P IL CA TGSG T F
Sbjct: 298 KSFSDSDIPQSMRRNVERAGYTRTTPIQQYTLPLVADGKDIL-ACAQTGSGKTAAF 352
>Z81449-4|CAB03765.1| 811|Caenorhabditis elegans Hypothetical
protein C46F11.4 protein.
Length = 811
Score = 36.3 bits (80), Expect = 0.028
Identities = 19/47 (40%), Positives = 28/47 (59%)
Frame = +2
Query: 683 KYVLDNVLKAGYRKPTPIQKNAIPNHNXXAXILMGCAXTGSG*TGXF 823
K +++ + K+ Y +PTPIQ AIP+ +L G A TGSG T +
Sbjct: 274 KLLMEAIRKSEYEQPTPIQAMAIPSALSGRDVL-GIAKTGSGKTAAY 319
>AC024753-1|AAF60456.1| 732|Caenorhabditis elegans Hypothetical
protein Y23H5B.6 protein.
Length = 732
Score = 35.5 bits (78), Expect = 0.048
Identities = 21/59 (35%), Positives = 32/59 (54%)
Frame = +2
Query: 638 ESSETYRKFETANLRKYVLDNVLKAGYRKPTPIQKNAIPNHNXXAXILMGCAXTGSG*T 814
+SS T+ +FE L L+ + Y KPT IQ++ I ++ ++G A TGSG T
Sbjct: 70 KSSRTFLRFEDFPLSWRTLEGLKDNDYTKPTEIQRDTIA-YSLTGSDVVGAAKTGSGKT 127
>Z29115-1|CAA82362.1| 489|Caenorhabditis elegans Hypothetical
protein T26G10.1 protein.
Length = 489
Score = 35.1 bits (77), Expect = 0.064
Identities = 19/56 (33%), Positives = 30/56 (53%)
Frame = +2
Query: 656 RKFETANLRKYVLDNVLKAGYRKPTPIQKNAIPNHNXXAXILMGCAXTGSG*TGXF 823
+ F + + + D + G+ KP+ IQ+ A+P H ++G A TGSG TG F
Sbjct: 44 KSFAELGVSQPLCDACQRLGWMKPSKIQQAALP-HALQGKDVIGLAETGSGKTGAF 98
>AC006661-5|AAF39890.2| 488|Caenorhabditis elegans Hypothetical
protein H20J04.4a protein.
Length = 488
Score = 31.9 bits (69), Expect = 0.60
Identities = 19/62 (30%), Positives = 29/62 (46%)
Frame = +2
Query: 638 ESSETYRKFETANLRKYVLDNVLKAGYRKPTPIQKNAIPNHNXXAXILMGCAXTGSG*TG 817
E + T +KF + ++ + + TP+Q IP + IL GCA TG+G T
Sbjct: 83 EDNMTTKKFSQLGVCSWITQQLQTMQIKTATPVQAACIPKILEGSDIL-GCARTGTGKTL 141
Query: 818 XF 823
F
Sbjct: 142 AF 143
>AC006661-4|ABB88208.1| 561|Caenorhabditis elegans Hypothetical
protein H20J04.4b protein.
Length = 561
Score = 31.9 bits (69), Expect = 0.60
Identities = 19/62 (30%), Positives = 29/62 (46%)
Frame = +2
Query: 638 ESSETYRKFETANLRKYVLDNVLKAGYRKPTPIQKNAIPNHNXXAXILMGCAXTGSG*TG 817
E + T +KF + ++ + + TP+Q IP + IL GCA TG+G T
Sbjct: 83 EDNMTTKKFSQLGVCSWITQQLQTMQIKTATPVQAACIPKILEGSDIL-GCARTGTGKTL 141
Query: 818 XF 823
F
Sbjct: 142 AF 143
>Z82275-3|CAL44962.1| 478|Caenorhabditis elegans Hypothetical
protein F02H6.2 protein.
Length = 478
Score = 31.1 bits (67), Expect = 1.0
Identities = 18/67 (26%), Positives = 30/67 (44%)
Frame = +3
Query: 474 DYEDNEIGENGETKKPVTYVPPEPTNDETEIFSSTISSGINFDKFDHIAVKVSGENPPRP 653
++ED E+ E + ++ T+DE E F I S I+ ++ I P+
Sbjct: 43 EFEDEEVDEEVDEEEDHAEDEERDTDDEVEGFDKEIVSDIDDEEVPQIDFGYDKNGDPQQ 102
Query: 654 IESSKLQ 674
+ES LQ
Sbjct: 103 LESPALQ 109
>Z82265-8|CAB05169.2| 478|Caenorhabditis elegans Hypothetical
protein F02H6.2 protein.
Length = 478
Score = 31.1 bits (67), Expect = 1.0
Identities = 18/67 (26%), Positives = 30/67 (44%)
Frame = +3
Query: 474 DYEDNEIGENGETKKPVTYVPPEPTNDETEIFSSTISSGINFDKFDHIAVKVSGENPPRP 653
++ED E+ E + ++ T+DE E F I S I+ ++ I P+
Sbjct: 43 EFEDEEVDEEVDEEEDHAEDEERDTDDEVEGFDKEIVSDIDDEEVPQIDFGYDKNGDPQQ 102
Query: 654 IESSKLQ 674
+ES LQ
Sbjct: 103 LESPALQ 109
>AF045641-1|AAK68386.1| 970|Caenorhabditis elegans Hypothetical
protein F53H1.1 protein.
Length = 970
Score = 31.1 bits (67), Expect = 1.0
Identities = 21/43 (48%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = +2
Query: 698 NVLKA-GYRKPTPIQKNAIPNHNXXAXILMGCAXTGSG*TGXF 823
NVLK Y KPT IQ AIP+ ++ G A TGSG T F
Sbjct: 317 NVLKKFEYSKPTSIQAQAIPSIMSGRDVI-GIAKTGSGKTLAF 358
>U80447-1|AAB37806.1| 746|Caenorhabditis elegans Hypothetical
protein F55F8.2a protein.
Length = 746
Score = 30.3 bits (65), Expect = 1.8
Identities = 16/45 (35%), Positives = 24/45 (53%)
Frame = +2
Query: 689 VLDNVLKAGYRKPTPIQKNAIPNHNXXAXILMGCAXTGSG*TGXF 823
VL+ + + G+ +PT IQ +P ++G A TGSG T F
Sbjct: 166 VLEAIEQMGFSEPTEIQSAVLPAAVRDRQDVLGAAETGSGKTLAF 210
>AC024844-2|AAK29954.2| 399|Caenorhabditis elegans Hypothetical
protein Y65B4A.6 protein.
Length = 399
Score = 30.3 bits (65), Expect = 1.8
Identities = 18/54 (33%), Positives = 29/54 (53%)
Frame = +2
Query: 662 FETANLRKYVLDNVLKAGYRKPTPIQKNAIPNHNXXAXILMGCAXTGSG*TGXF 823
F+ LR+ +L + G+ KP+ IQ+ AIP A ++ A +G+G T F
Sbjct: 28 FDKMGLREDLLRGIYAYGFEKPSAIQQRAIP-AILKARDVIAQAQSGTGKTATF 80
>AF039720-12|AAB96704.1| 399|Caenorhabditis elegans Hypothetical
protein F33D11.10 protein.
Length = 399
Score = 29.9 bits (64), Expect = 2.4
Identities = 17/54 (31%), Positives = 29/54 (53%)
Frame = +2
Query: 662 FETANLRKYVLDNVLKAGYRKPTPIQKNAIPNHNXXAXILMGCAXTGSG*TGXF 823
F+ LR+ +L + G+ KP+ IQ+ A+P A ++ A +G+G T F
Sbjct: 28 FDKMGLREDLLRGIYAYGFEKPSAIQQRAVP-AILKARDVIAQAQSGTGKTATF 80
>Z75546-3|CAA99891.1| 581|Caenorhabditis elegans Hypothetical
protein R05D11.4 protein.
Length = 581
Score = 29.5 bits (63), Expect = 3.2
Identities = 17/55 (30%), Positives = 29/55 (52%)
Frame = +2
Query: 659 KFETANLRKYVLDNVLKAGYRKPTPIQKNAIPNHNXXAXILMGCAXTGSG*TGXF 823
+F +++ +L+ + + R+P+PIQ +IP +L A TGSG T F
Sbjct: 127 RFSDSSMSPSLLNRLSENSIRQPSPIQMQSIPFMTERRNVL-ASAPTGSGKTLAF 180
>AC024876-4|AAU05555.1| 825|Caenorhabditis elegans Hypothetical
protein Y94H6A.5a protein.
Length = 825
Score = 29.1 bits (62), Expect = 4.2
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = +2
Query: 707 KAGYRKPTPIQKNAIPNHNXXAXILMGCAXTGSG*TGXF 823
K G+ +PTPIQ+ IP + + + TGSG T F
Sbjct: 41 KKGFNQPTPIQRKTIPCIMDGKDV-VAMSRTGSGKTAAF 78
>AC024876-3|AAU05556.1| 871|Caenorhabditis elegans Hypothetical
protein Y94H6A.5b protein.
Length = 871
Score = 29.1 bits (62), Expect = 4.2
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = +2
Query: 707 KAGYRKPTPIQKNAIPNHNXXAXILMGCAXTGSG*TGXF 823
K G+ +PTPIQ+ IP + + + TGSG T F
Sbjct: 41 KKGFNQPTPIQRKTIPCIMDGKDV-VAMSRTGSGKTAAF 78
>AF025451-3|AAB71200.2| 634|Caenorhabditis elegans Hypothetical
protein C24H12.4a protein.
Length = 634
Score = 28.7 bits (61), Expect = 5.5
Identities = 18/57 (31%), Positives = 29/57 (50%)
Frame = +2
Query: 653 YRKFETANLRKYVLDNVLKAGYRKPTPIQKNAIPNHNXXAXILMGCAXTGSG*TGXF 823
++ F L + +L ++ + G+ K +Q++ I I MG A TGSG TG F
Sbjct: 88 HKTFADFGLDERILKSIGELGWEKANQVQESVISLALENKNI-MGRARTGSGKTGAF 143
>AC006733-9|AAF60491.2| 3901|Caenorhabditis elegans Hypothetical
protein Y32H12A.8 protein.
Length = 3901
Score = 28.3 bits (60), Expect = 7.3
Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Frame = +3
Query: 123 DDDWDDSCEAVVVPPPPLQNHDSVDEGH-SLSRGRGFPSFNEDDEKE 260
D+D D + + PPPP +N V E SR R E+DE E
Sbjct: 1002 DEDRTDLVKYYLNPPPPPKNEVRVQEEQLEGSRKRKLEQIQEEDEDE 1048
>Z12116-1|CAA78102.1| 402|Caenorhabditis elegans protein (
C.elegans mRNA for eIF-4A homologue. ).
Length = 402
Score = 27.9 bits (59), Expect = 9.7
Identities = 16/59 (27%), Positives = 28/59 (47%)
Frame = +2
Query: 647 ETYRKFETANLRKYVLDNVLKAGYRKPTPIQKNAIPNHNXXAXILMGCAXTGSG*TGXF 823
+ F+ L++ +L + G+ KP+ IQK AI ++ A +G+G T F
Sbjct: 26 QVVESFDDMELKEELLRGIYGFGFEKPSAIQKRAIVPCTTGKDVI-AQAQSGTGKTATF 83
>U13876-3|AAA21170.1| 402|Caenorhabditis elegans Initiation factor
protein 1, isoforma protein.
Length = 402
Score = 27.9 bits (59), Expect = 9.7
Identities = 16/59 (27%), Positives = 28/59 (47%)
Frame = +2
Query: 647 ETYRKFETANLRKYVLDNVLKAGYRKPTPIQKNAIPNHNXXAXILMGCAXTGSG*TGXF 823
+ F+ L++ +L + G+ KP+ IQK AI ++ A +G+G T F
Sbjct: 26 QVVESFDDMELKEELLRGIYGFGFEKPSAIQKRAIVPCTTGKDVI-AQAQSGTGKTATF 83
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,322,621
Number of Sequences: 27780
Number of extensions: 279532
Number of successful extensions: 906
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 854
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 889
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2118983636
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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