Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP17_F_F04
         (852 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       69   5e-14
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    23   3.6  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    23   3.6  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   4.7  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              22   6.2  
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    22   8.2  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 68.9 bits (161), Expect = 5e-14
 Identities = 45/124 (36%), Positives = 62/124 (50%)
 Frame = +3

Query: 480 EDNEIGENGETKKPVTYVPPEPTNDETEIFSSTISSGINFDKFDHIAVKVSGENPPRPIE 659
           EDN+  E  + K+   Y+PPE  NDE  +F + +  GINFDK+D+I V VSG+N P+PIE
Sbjct: 139 EDNDEEEAQKPKEQ--YIPPELPNDEKSLFENGVEIGINFDKYDNIQVNVSGDNVPQPIE 196

Query: 660 SSKLQISESMF*IMYLRLVIENPHLFRKMQSPIIMXWXXF*WVVPXLVRXKXAXFXVPXI 839
           S +     ++      +   + P   +K   PIIM               K A F VP I
Sbjct: 197 SFEAAGLRNIVLDNIKKSGYKKPTPVQKHALPIIMNGRDL-MACAQTGSGKTAAFAVPII 255

Query: 840 NMXL 851
           N  L
Sbjct: 256 NTLL 259


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +2

Query: 692 LDNVLKAGYRKPTPIQKNAIPNH 760
           LDN++ A + K   I  + +PNH
Sbjct: 102 LDNLVSAAHEKGLKIILDFVPNH 124


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +2

Query: 692 LDNVLKAGYRKPTPIQKNAIPNH 760
           LDN++ A + K   I  + +PNH
Sbjct: 102 LDNLVSAAHEKGLKIILDFVPNH 124


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = +3

Query: 162  PPPPLQNHD 188
            PPPP +NHD
Sbjct: 1860 PPPPPRNHD 1868


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +3

Query: 492 IGENGETKKPVTYVPPEP 545
           +G+N E K  VT  PP P
Sbjct: 324 VGDNVEIKCDVTGTPPPP 341


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
 Frame = +3

Query: 147 EAVVVPPPPLQNHDSVDEGHSLSRGRGFPSFNEDDEKE-NG 266
           E   V P   Q+H S+D  +++S      S  + DE E NG
Sbjct: 529 ETTPVLPSRFQSHPSIDSANTISNS----SLQDYDETEFNG 565


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 174,953
Number of Sequences: 438
Number of extensions: 3457
Number of successful extensions: 14
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27431202
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)