Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP17_F_F03
(891 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein Bms1|Schizosacc... 27 2.7
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|... 27 3.6
SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gc... 26 6.3
>SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein
Bms1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1121
Score = 27.5 bits (58), Expect = 2.7
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = +2
Query: 581 SEVAKPDRTIKIPGVSPWKLPRALSCSDPCRLPD 682
+ + K D ++ IPGV + S DPC PD
Sbjct: 281 TNLPKHDASVHIPGVGDFVTSDVSSLEDPCPPPD 314
>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1752
Score = 27.1 bits (57), Expect = 3.6
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +3
Query: 768 APSWAVCTNPPFSPTAAPYXVLSS*VXPVNTTYRPGS 878
+PS++ T+P +SPT+ Y S P + +Y P S
Sbjct: 1589 SPSYSP-TSPSYSPTSPSYSATSPSYSPTSPSYSPTS 1624
Score = 27.1 bits (57), Expect = 3.6
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +3
Query: 768 APSWAVCTNPPFSPTAAPYXVLSS*VXPVNTTYRPGS 878
+PS++ T+P +SPT+ Y S P + +Y P S
Sbjct: 1603 SPSYSA-TSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1638
Score = 26.2 bits (55), Expect = 6.3
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +3
Query: 768 APSWAVCTNPPFSPTAAPYXVLSS*VXPVNTTYRPGS 878
+PS++ T+P +SPT+ Y S P + +Y P S
Sbjct: 1610 SPSYSP-TSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1645
Score = 26.2 bits (55), Expect = 6.3
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +3
Query: 768 APSWAVCTNPPFSPTAAPYXVLSS*VXPVNTTYRPGS 878
+PS++ T+P +SPT+ Y S P + +Y P S
Sbjct: 1617 SPSYSP-TSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1652
Score = 26.2 bits (55), Expect = 6.3
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +3
Query: 768 APSWAVCTNPPFSPTAAPYXVLSS*VXPVNTTYRPGS 878
+PS++ T+P +SPT+ Y S P + +Y P S
Sbjct: 1624 SPSYSP-TSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1659
Score = 26.2 bits (55), Expect = 6.3
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +3
Query: 768 APSWAVCTNPPFSPTAAPYXVLSS*VXPVNTTYRPGS 878
+PS++ T+P +SPT+ Y S P + +Y P S
Sbjct: 1631 SPSYSP-TSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1666
Score = 26.2 bits (55), Expect = 6.3
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +3
Query: 768 APSWAVCTNPPFSPTAAPYXVLSS*VXPVNTTYRPGS 878
+PS++ T+P +SPT+ Y S P + +Y P S
Sbjct: 1638 SPSYSP-TSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1673
Score = 26.2 bits (55), Expect = 6.3
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +3
Query: 768 APSWAVCTNPPFSPTAAPYXVLSS*VXPVNTTYRPGS 878
+PS++ T+P +SPT+ Y S P + +Y P S
Sbjct: 1645 SPSYSP-TSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1680
Score = 26.2 bits (55), Expect = 6.3
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +3
Query: 768 APSWAVCTNPPFSPTAAPYXVLSS*VXPVNTTYRPGS 878
+PS++ T+P +SPT+ Y S P + +Y P S
Sbjct: 1652 SPSYSP-TSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1687
Score = 26.2 bits (55), Expect = 6.3
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +3
Query: 768 APSWAVCTNPPFSPTAAPYXVLSS*VXPVNTTYRPGS 878
+PS++ T+P +SPT+ Y S P + +Y P S
Sbjct: 1659 SPSYSP-TSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1694
Score = 26.2 bits (55), Expect = 6.3
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +3
Query: 768 APSWAVCTNPPFSPTAAPYXVLSS*VXPVNTTYRPGS 878
+PS++ T+P +SPT+ Y S P + +Y P S
Sbjct: 1666 SPSYSP-TSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1701
Score = 26.2 bits (55), Expect = 6.3
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +3
Query: 768 APSWAVCTNPPFSPTAAPYXVLSS*VXPVNTTYRPGS 878
+PS++ T+P +SPT+ Y S P + +Y P S
Sbjct: 1673 SPSYSP-TSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1708
Score = 26.2 bits (55), Expect = 6.3
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +3
Query: 768 APSWAVCTNPPFSPTAAPYXVLSS*VXPVNTTYRPGS 878
+PS++ T+P +SPT+ Y S P + +Y P S
Sbjct: 1680 SPSYSP-TSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1715
Score = 26.2 bits (55), Expect = 6.3
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +3
Query: 768 APSWAVCTNPPFSPTAAPYXVLSS*VXPVNTTYRPGS 878
+PS++ T+P +SPT+ Y S P + +Y P S
Sbjct: 1687 SPSYSP-TSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1722
Score = 26.2 bits (55), Expect = 6.3
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +3
Query: 768 APSWAVCTNPPFSPTAAPYXVLSS*VXPVNTTYRPGS 878
+PS++ T+P +SPT+ Y S P + +Y P S
Sbjct: 1694 SPSYSP-TSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1729
Score = 26.2 bits (55), Expect = 6.3
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +3
Query: 768 APSWAVCTNPPFSPTAAPYXVLSS*VXPVNTTYRPGS 878
+PS++ T+P +SPT+ Y S P + +Y P S
Sbjct: 1701 SPSYSP-TSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1736
Score = 26.2 bits (55), Expect = 6.3
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +3
Query: 768 APSWAVCTNPPFSPTAAPYXVLSS*VXPVNTTYRPGS 878
+PS++ T+P +SPT+ Y S P + +Y P S
Sbjct: 1708 SPSYSP-TSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1743
Score = 26.2 bits (55), Expect = 6.3
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +3
Query: 768 APSWAVCTNPPFSPTAAPYXVLSS*VXPVNTTYRPGS 878
+PS++ T+P +SPT+ Y S P + +Y P S
Sbjct: 1715 SPSYSP-TSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1750
>SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gcn2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1576
Score = 26.2 bits (55), Expect = 6.3
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = -1
Query: 669 QGSEQESARGSFQGETPGIFIVLSGFATSDLSVDFCDAR-QGGGAYGK 529
QG+ +SAR S+ G+ GI +L + S DF + G G +G+
Sbjct: 522 QGTFSKSARPSYGGQQDGIIDLLYRKSVSRYETDFEELEFLGRGGFGE 569
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,389,143
Number of Sequences: 5004
Number of extensions: 67691
Number of successful extensions: 180
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 180
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 448490560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -