Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP17_F_F03
         (891 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024843-12|AAF60833.3|  986|Caenorhabditis elegans Hypothetical...    33   0.36 
U53336-10|AAA96182.2|  125|Caenorhabditis elegans Hypothetical p...    31   1.1  
U02289-1|AAA18934.1| 1439|Caenorhabditis elegans GTPase-activati...    30   2.6  
L16687-1|AAK71357.2| 1317|Caenorhabditis elegans Hypothetical pr...    30   2.6  
Z80215-14|CAI79138.1|  662|Caenorhabditis elegans Hypothetical p...    29   3.4  
Z80215-13|CAI79137.1|  640|Caenorhabditis elegans Hypothetical p...    29   3.4  
Z80215-12|CAB02277.1|  652|Caenorhabditis elegans Hypothetical p...    29   3.4  
AC006729-6|AAF60464.1|  282|Caenorhabditis elegans Hypothetical ...    28   7.8  

>AC024843-12|AAF60833.3|  986|Caenorhabditis elegans Hypothetical
           protein Y61A9LA.10 protein.
          Length = 986

 Score = 32.7 bits (71), Expect = 0.36
 Identities = 17/51 (33%), Positives = 24/51 (47%)
 Frame = +2

Query: 593 KPDRTIKIPGVSPWKLPRALSCSDPCRLPDTCPPFSLREAWRFLIAHAVGI 745
           K   +I +PGV   ++    S  DPC LPD     +L E  R + A   G+
Sbjct: 220 KNHSSIHVPGVGDMRISNVTSLPDPCPLPDEIKKRALNEKERKVYAPFSGL 270


>U53336-10|AAA96182.2|  125|Caenorhabditis elegans Hypothetical
           protein K07C11.10 protein.
          Length = 125

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 17/42 (40%), Positives = 25/42 (59%)
 Frame = -2

Query: 758 TPELRYLQREL*ESATLPEGRKADRYPVSGRGRNRRAHEGAS 633
           T +L  +QRE  E   +PEG+KA R P S    + +++EG S
Sbjct: 71  TQKLEKMQREQMERLQVPEGQKA-RTPESAEAESPKSNEGPS 111


>U02289-1|AAA18934.1| 1439|Caenorhabditis elegans GTPase-activating
           protein protein.
          Length = 1439

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 23/82 (28%), Positives = 36/82 (43%), Gaps = 3/82 (3%)
 Frame = -1

Query: 867 DKSCLPGXLKTIVPDKAQ---RSG*TGGSCTQPSLERTTYTRTEIPTA*AMRKRHASRRE 697
           D S +P   +T+    +     S   G S    + E  T T T   +    +K  A+++ 
Sbjct: 696 DPSTVPSSSQTMATTSSSFHHHSSQAGPSRDIENGEAPTATATTPKSGRKWKKSKAAKQG 755

Query: 696 KGGQVSGKRQGSEQESARGSFQ 631
            GG  SG   GS+Q+ A G+ Q
Sbjct: 756 SGGGSSGSSSGSQQQGAAGAPQ 777


>L16687-1|AAK71357.2| 1317|Caenorhabditis elegans Hypothetical
           protein C04D8.1 protein.
          Length = 1317

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 23/82 (28%), Positives = 36/82 (43%), Gaps = 3/82 (3%)
 Frame = -1

Query: 867 DKSCLPGXLKTIVPDKAQ---RSG*TGGSCTQPSLERTTYTRTEIPTA*AMRKRHASRRE 697
           D S +P   +T+    +     S   G S    + E  T T T   +    +K  A+++ 
Sbjct: 574 DPSTVPSSSQTMATTSSSFHHHSSQAGPSRDIENGEAPTATATTPKSGRKWKKSKAAKQG 633

Query: 696 KGGQVSGKRQGSEQESARGSFQ 631
            GG  SG   GS+Q+ A G+ Q
Sbjct: 634 SGGGSSGSSSGSQQQGAAGAPQ 655


>Z80215-14|CAI79138.1|  662|Caenorhabditis elegans Hypothetical
           protein C36B1.12c protein.
          Length = 662

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 12/36 (33%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = -2

Query: 530 KRQQRGLFTVPGLLLAFCSHVLSCV-IPLILWITVL 426
           +RQ      +  + +A C HVL C+ +P + WI++L
Sbjct: 390 RRQPYAFILLDVINMALCMHVLKCLRLPSLKWISIL 425


>Z80215-13|CAI79137.1|  640|Caenorhabditis elegans Hypothetical
           protein C36B1.12b protein.
          Length = 640

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 12/36 (33%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = -2

Query: 530 KRQQRGLFTVPGLLLAFCSHVLSCV-IPLILWITVL 426
           +RQ      +  + +A C HVL C+ +P + WI++L
Sbjct: 390 RRQPYAFILLDVINMALCMHVLKCLRLPSLKWISIL 425


>Z80215-12|CAB02277.1|  652|Caenorhabditis elegans Hypothetical
           protein C36B1.12a protein.
          Length = 652

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 12/36 (33%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = -2

Query: 530 KRQQRGLFTVPGLLLAFCSHVLSCV-IPLILWITVL 426
           +RQ      +  + +A C HVL C+ +P + WI++L
Sbjct: 390 RRQPYAFILLDVINMALCMHVLKCLRLPSLKWISIL 425


>AC006729-6|AAF60464.1|  282|Caenorhabditis elegans Hypothetical
           protein Y24D9A.5 protein.
          Length = 282

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 10/30 (33%), Positives = 20/30 (66%)
 Frame = +1

Query: 421 GGNTVIHRIRGITQERTCEQKASKRPGTVK 510
           GG +V +R   + Q+++   ++SKRPG ++
Sbjct: 167 GGKSVFYRFTNLIQKKSFSVRSSKRPGILQ 196


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,416,810
Number of Sequences: 27780
Number of extensions: 415350
Number of successful extensions: 1140
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1021
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1136
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2255353870
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)