Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP17_F_F01
         (906 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    24   1.9  
U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           22   5.7  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    22   7.6  

>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 12/41 (29%), Positives = 13/41 (31%)
 Frame = +1

Query: 490 PXPPLSXPXXPXXXRGPXLSYAXPPPXXXPPLSLXXPPXPP 612
           P P    P        P   Y  PP    PP  +  P  PP
Sbjct: 45  PDPGSCDPSVGLRQGIPPHHYGGPPSGGQPPQGMPYPRFPP 85


>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 12/43 (27%), Positives = 14/43 (32%)
 Frame = +3

Query: 375 PXPPPXXPXDPXPPXHHTPXPNXSXFGDRSIPSPXXRXTPPPP 503
           P P P  P  P P    +P          S  S     +PP P
Sbjct: 80  PEPDPEIPVAPEPAPLASPLVQEPGSSTTSATSGAVMASPPMP 122


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 8/18 (44%), Positives = 8/18 (44%)
 Frame = +2

Query: 680  PPXPPXXPXPPXPAXPXP 733
            PP PP    PP P    P
Sbjct: 1376 PPIPPTSEKPPLPEELKP 1393


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 128,470
Number of Sequences: 336
Number of extensions: 3064
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 25237652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)