Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP17_F_E24
         (1079 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    28   2.0  
SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces p...    27   6.0  
SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces pom...    26   7.9  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 28.3 bits (60), Expect = 2.0
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -3

Query: 486 PPPNLATKTGPALPASSGSPRTSIP 412
           PPP +  ++ PALP    + RTS P
Sbjct: 391 PPPAIPGRSAPALPPLGNASRTSTP 415


>SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 749

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -3

Query: 492 HRPPPNLATKTGPALPASSGSPRTSIP 412
           +RP     T+  PA+P  +GSP T  P
Sbjct: 518 YRPASTQPTENPPAMPDHNGSPTTEPP 544


>SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 204

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -3

Query: 486 PPPNLATKTGPALPASSGSPRTSIP 412
           PPP+ +    PA PA+S S     P
Sbjct: 62  PPPSYSNSAAPATPAASASSAAPAP 86


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,234,093
Number of Sequences: 5004
Number of extensions: 40539
Number of successful extensions: 93
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 567771870
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)