Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP17_F_E24
         (1079 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0188 - 17691582-17692241                                         31   1.2  
05_06_0098 + 25560158-25560925                                         29   8.4  

>06_03_0188 - 17691582-17692241
          Length = 219

 Score = 31.5 bits (68), Expect = 1.2
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = -3

Query: 525 LSISPWTSTAGHRPPPNLATKTGPALPAS 439
           L  SPW  T+  +PPP   T T  A+PAS
Sbjct: 21  LPASPWVMTSLEKPPPWTTTTTTMAVPAS 49


>05_06_0098 + 25560158-25560925
          Length = 255

 Score = 28.7 bits (61), Expect = 8.4
 Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = -3

Query: 507 TSTAGHRPPPNLATKTG-PALPASSGSPRTSIPIT 406
           +S + HRPPP   + +  PALP    SPRT +P T
Sbjct: 26  SSPSSHRPPPPPPSSSSQPALPP---SPRTVVPRT 57


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,163,168
Number of Sequences: 37544
Number of extensions: 251058
Number of successful extensions: 885
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 860
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 885
length of database: 14,793,348
effective HSP length: 83
effective length of database: 11,677,196
effective search space used: 3222906096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)