Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP17_F_E24
         (1079 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE006466-9|AAK61273.1|  357|Homo sapiens unknown protein.              33   2.4  
AF427620-1|AAN86135.1|  222|Homo sapiens TREM4 beta protein.           31   7.3  
AF427619-1|AAN86134.1|  233|Homo sapiens TREM4 alpha protein.          31   7.3  
AK095260-1|BAC04513.1|  273|Homo sapiens protein ( Homo sapiens ...    31   9.6  

>AE006466-9|AAK61273.1|  357|Homo sapiens unknown protein.
          Length = 357

 Score = 32.7 bits (71), Expect = 2.4
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = -1

Query: 488 GLPQTSPQRPVLRCLHPADPREPQYPSLDS 399
           G+ Q +PQ P L  LH + P EPQ P  D+
Sbjct: 23  GITQCNPQPPPLPTLHHSRPEEPQLPEEDT 52


>AF427620-1|AAN86135.1|  222|Homo sapiens TREM4 beta protein.
          Length = 222

 Score = 31.1 bits (67), Expect = 7.3
 Identities = 19/45 (42%), Positives = 22/45 (48%), Gaps = 4/45 (8%)
 Frame = -3

Query: 525 LSISPWTSTAGHRPPPNL----ATKTGPALPASSGSPRTSIPITR 403
           L IS +      RPP  L    A  T PAL + S  PR SIP+ R
Sbjct: 118 LLISLFVFPGSSRPPMQLDSTSAEDTSPALSSGSSKPRVSIPMVR 162


>AF427619-1|AAN86134.1|  233|Homo sapiens TREM4 alpha protein.
          Length = 233

 Score = 31.1 bits (67), Expect = 7.3
 Identities = 19/45 (42%), Positives = 22/45 (48%), Gaps = 4/45 (8%)
 Frame = -3

Query: 525 LSISPWTSTAGHRPPPNL----ATKTGPALPASSGSPRTSIPITR 403
           L IS +      RPP  L    A  T PAL + S  PR SIP+ R
Sbjct: 118 LLISLFVFPGSSRPPMQLDSTSAEDTSPALSSGSSKPRVSIPMVR 162


>AK095260-1|BAC04513.1|  273|Homo sapiens protein ( Homo sapiens
           cDNA FLJ37941 fis, clone CTONG2008269. ).
          Length = 273

 Score = 30.7 bits (66), Expect = 9.6
 Identities = 16/34 (47%), Positives = 20/34 (58%), Gaps = 3/34 (8%)
 Frame = -3

Query: 495 GHRP---PPNLATKTGPALPASSGSPRTSIPITR 403
           GHR     P   T +GPA P++  SPRT  PIT+
Sbjct: 84  GHRAGSAAPGTRTGSGPAPPSAPLSPRTEAPITQ 117


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 77,473,643
Number of Sequences: 237096
Number of extensions: 1379603
Number of successful extensions: 8004
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7757
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8000
length of database: 76,859,062
effective HSP length: 91
effective length of database: 55,283,326
effective search space used: 14815931368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)