Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP17_F_E24
         (1079 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132904-6|CAD91706.2|  326|Caenorhabditis elegans Hypothetical ...    30   3.3  
Z79756-9|CAK12562.1|  830|Caenorhabditis elegans Hypothetical pr...    29   5.7  
Z79756-8|CAB02122.1|  891|Caenorhabditis elegans Hypothetical pr...    29   5.7  
Z79756-7|CAK12561.1|  855|Caenorhabditis elegans Hypothetical pr...    29   5.7  

>AL132904-6|CAD91706.2|  326|Caenorhabditis elegans Hypothetical
           protein Y111B2A.9b protein.
          Length = 326

 Score = 29.9 bits (64), Expect = 3.3
 Identities = 16/41 (39%), Positives = 18/41 (43%)
 Frame = +1

Query: 382 YRKRQKESSDGY*GSRGSAGCRQRRTGLCGEVWGRPMSSSG 504
           +RKR   S   +  S  S  C   R GLC    G   SSSG
Sbjct: 131 FRKRILSSDKSFGSSSSSNPCSSSRNGLCSNNSGSSSSSSG 171


>Z79756-9|CAK12562.1|  830|Caenorhabditis elegans Hypothetical
           protein F53C11.5c protein.
          Length = 830

 Score = 29.1 bits (62), Expect = 5.7
 Identities = 15/34 (44%), Positives = 18/34 (52%)
 Frame = -3

Query: 519 ISPWTSTAGHRPPPNLATKTGPALPASSGSPRTS 418
           IS  T+     PPP   T   P  P++S SPRTS
Sbjct: 446 ISSATTLTAQAPPPQALTS--PRTPSTSASPRTS 477


>Z79756-8|CAB02122.1|  891|Caenorhabditis elegans Hypothetical
           protein F53C11.5b protein.
          Length = 891

 Score = 29.1 bits (62), Expect = 5.7
 Identities = 15/34 (44%), Positives = 18/34 (52%)
 Frame = -3

Query: 519 ISPWTSTAGHRPPPNLATKTGPALPASSGSPRTS 418
           IS  T+     PPP   T   P  P++S SPRTS
Sbjct: 507 ISSATTLTAQAPPPQALTS--PRTPSTSASPRTS 538


>Z79756-7|CAK12561.1|  855|Caenorhabditis elegans Hypothetical
           protein F53C11.5a protein.
          Length = 855

 Score = 29.1 bits (62), Expect = 5.7
 Identities = 15/34 (44%), Positives = 18/34 (52%)
 Frame = -3

Query: 519 ISPWTSTAGHRPPPNLATKTGPALPASSGSPRTS 418
           IS  T+     PPP   T   P  P++S SPRTS
Sbjct: 471 ISSATTLTAQAPPPQALTS--PRTPSTSASPRTS 502


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,239,077
Number of Sequences: 27780
Number of extensions: 224136
Number of successful extensions: 613
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 551
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 613
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2898039926
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)