Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP17_F_E23
         (907 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0003 + 29476-29847,30192-31519,31612-31722,31836-32112,322...    29   6.7  
03_06_0524 - 34502286-34502609,34502998-34503084,34503280-345033...    28   8.9  

>05_01_0003 + 29476-29847,30192-31519,31612-31722,31836-32112,
            32233-33714
          Length = 1189

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 13/48 (27%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
 Frame = -3

Query: 353  LS*VLCS**YFD*KFSMTLNI-ESHFSHTGLVFFNKWSTVLFSIFYNA 213
            +S ++C   Y +  F +TL + E++ S +G  F+N W+   +++F+ +
Sbjct: 904  ISAMICYFFYKNITFGVTLFLYEAYTSFSGQTFYNDWALSTYNVFFTS 951


>03_06_0524 -
           34502286-34502609,34502998-34503084,34503280-34503360,
           34503962-34504114,34504898-34504954,34505050-34505296,
           34505412-34505527,34506074-34506225,34506713-34506902,
           34506976-34507169,34507256-34507388
          Length = 577

 Score = 28.3 bits (60), Expect = 8.9
 Identities = 7/21 (33%), Positives = 17/21 (80%)
 Frame = -3

Query: 77  GFFTYDAIQFIQILRIPYSES 15
           GFF+YD +++++  ++P+S +
Sbjct: 177 GFFSYDTVRYVETKKLPFSNA 197


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,928,343
Number of Sequences: 37544
Number of extensions: 331393
Number of successful extensions: 659
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 648
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 659
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2565528060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)