Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP17_F_E21
(917 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4G9.04c |||cleavage and polyadenylation specificity factor |... 28 1.6
SPAC22A12.02c |mug103||sequence orphan|Schizosaccharomyces pombe... 28 2.1
SPBC25D12.02c |dnt1||nucleolar protein Dnt1|Schizosaccharomyces ... 27 2.8
SPBC3E7.12c |chr1|cfh4|chitin synthase regulatory factor |Schizo... 27 3.7
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy... 27 3.7
SPBC1734.02c |cdc27|SPBC337.18c|DNA polymerase delta subunit Cdc... 27 4.9
SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyc... 27 4.9
SPCC18B5.03 |wee1||dual specificity protein kinase Wee1|Schizosa... 26 6.5
SPBC409.15 |||rRNA processing protein Tsr2 |Schizosaccharomyces ... 26 8.6
SPCC1620.09c |tfg1||transcription factor TFIIF complex alpha sub... 26 8.6
SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyce... 26 8.6
>SPAC4G9.04c |||cleavage and polyadenylation specificity factor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 638
Score = 28.3 bits (60), Expect = 1.6
Identities = 14/26 (53%), Positives = 17/26 (65%)
Frame = +3
Query: 474 NLNGNTNEESGSIDSLEANVSGSHIV 551
N N T EES SIDSL AN+ + +V
Sbjct: 347 NANALTPEESSSIDSLFANLQAAGLV 372
>SPAC22A12.02c |mug103||sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 124
Score = 27.9 bits (59), Expect = 2.1
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +3
Query: 369 LPPLQKIPAMNKTEENPFLIEDVTNSNVDDKQKADN 476
LPPLQ+ + K + NPFL + N +D +D+
Sbjct: 62 LPPLQRNNTIRKRKRNPFLADRPYCINSEDMPLSDD 97
>SPBC25D12.02c |dnt1||nucleolar protein Dnt1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 599
Score = 27.5 bits (58), Expect = 2.8
Identities = 16/75 (21%), Positives = 36/75 (48%)
Frame = +3
Query: 363 TELPPLQKIPAMNKTEENPFLIEDVTNSNVDDKQKADNLNGNTNEESGSIDSLEANVSGS 542
T P +P+ N T E+ + ++ S+ + + N +T+++ +DS ++
Sbjct: 342 TSSHPSTAVPSENDTTESEN--DTLSESSTTSISSSPSENSDTSDDLTKVDSPNKSLVND 399
Query: 543 HIVNINDLEIENGST 587
++ +D E ENG +
Sbjct: 400 NVSAKHDKESENGKS 414
>SPBC3E7.12c |chr1|cfh4|chitin synthase regulatory factor
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 456
Score = 27.1 bits (57), Expect = 3.7
Identities = 17/69 (24%), Positives = 29/69 (42%)
Frame = +3
Query: 387 IPAMNKTEENPFLIEDVTNSNVDDKQKADNLNGNTNEESGSIDSLEANVSGSHIVNINDL 566
+PA E P + D N D K DN++ +ES + GS + ++D+
Sbjct: 1 MPASTSIPETPSKLPDALLVNSDPASKVDNVSVKIEQES------PLALEGSPLPTVSDV 54
Query: 567 EIENGSTHD 593
E + H+
Sbjct: 55 LPETNNAHE 63
>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2052
Score = 27.1 bits (57), Expect = 3.7
Identities = 13/42 (30%), Positives = 27/42 (64%)
Frame = +3
Query: 306 DFTNNDFNIINEATRQITLTELPPLQKIPAMNKTEENPFLIE 431
+F+NN+ + +E R L ++PPLQ++ + ++EN ++E
Sbjct: 1832 EFSNNEDD--SELERLSKLIKVPPLQELYSQMSSDENNQILE 1871
>SPBC1734.02c |cdc27|SPBC337.18c|DNA polymerase delta subunit
Cdc27|Schizosaccharomyces pombe|chr 2|||Manual
Length = 372
Score = 26.6 bits (56), Expect = 4.9
Identities = 15/48 (31%), Positives = 25/48 (52%)
Frame = -2
Query: 541 DPLTLASNESIDPDSSFVFPFKLSAFCLSSTLEFVTSSIKNGFSSVLF 398
D + L +E P S+F P C S+L+ S +K+G+ +V+F
Sbjct: 62 DEINLEIDEESQPISNF--PVLQYILCDKSSLQEKQSRLKSGYKTVIF 107
>SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 26.6 bits (56), Expect = 4.9
Identities = 20/91 (21%), Positives = 39/91 (42%), Gaps = 1/91 (1%)
Frame = +3
Query: 198 INTPLKRVTAMNGHIVDNVACGGCHTLLTATKGSNADFTNNDFNIINEATRQITLT-ELP 374
I TP + + H++ HT G + N + I + + ++ T + P
Sbjct: 954 IKTPHTELQKITDHVLKGTTSLANHTNELLGLGDES-LCNLETTIEDTSLVKLETTGDTP 1012
Query: 375 PLQKIPAMNKTEENPFLIEDVTNSNVDDKQK 467
+++PA + LI++ TN N+D +K
Sbjct: 1013 SKRELPATPSWTRDSSLIKETTNLNLDSDKK 1043
>SPCC18B5.03 |wee1||dual specificity protein kinase
Wee1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 877
Score = 26.2 bits (55), Expect = 6.5
Identities = 16/52 (30%), Positives = 29/52 (55%)
Frame = +3
Query: 381 QKIPAMNKTEENPFLIEDVTNSNVDDKQKADNLNGNTNEESGSIDSLEANVS 536
Q+ PA NPF E+ + ++D +Q + + N N+ S +++ EA+VS
Sbjct: 487 QRCPAT--PTRNPFAFENTVSIHMDGRQPSPIKSRNNNQMSFAMEE-EADVS 535
>SPBC409.15 |||rRNA processing protein Tsr2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 179
Score = 25.8 bits (54), Expect = 8.6
Identities = 11/39 (28%), Positives = 20/39 (51%)
Frame = +3
Query: 138 GIINCVWTISTTPTQTRWSPINTPLKRVTAMNGHIVDNV 254
G++ C W + + W+ ++T KR M G +VD +
Sbjct: 17 GVLLCSWPVMKQAVEEEWADVDTADKR-DWMAGVLVDYI 54
>SPCC1620.09c |tfg1||transcription factor TFIIF complex alpha
subunit Tfg1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 490
Score = 25.8 bits (54), Expect = 8.6
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -2
Query: 535 LTLASNESIDPDSSFVFPFKL 473
L SN++IDP SFV P K+
Sbjct: 62 LKFHSNKAIDPSKSFVPPIKM 82
>SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 993
Score = 25.8 bits (54), Expect = 8.6
Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
Frame = +3
Query: 423 LIEDVTNSNVDDKQKADNLNGNTNEE---SGSIDSLEANVSGSHIVNINDLEIENGSTH 590
++ED + Q++ L N + +G DS EAN+ GSH + I G+T+
Sbjct: 211 MVEDYNVYGLSGSQQSFRLGNNLTKTFWATGYSDSPEANMYGSHPFYMEQRYIPIGTTN 269
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,187,669
Number of Sequences: 5004
Number of extensions: 62801
Number of successful extensions: 215
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 207
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 215
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 466510270
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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