Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP17_F_E21
(917 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_1034 - 21865633-21865811,21865838-21865860,21866345-218664... 33 0.32
01_07_0288 + 42534552-42534558,42535302-42537280,42537367-425375... 31 1.3
03_01_0082 + 653041-653137,653219-653496,653596-653689,653804-65... 30 3.0
04_04_1657 - 35102751-35102868,35102987-35103504,35104065-351042... 29 5.2
04_04_0751 - 27769616-27769684,27769795-27769917,27769998-277707... 29 5.2
08_02_1042 - 23887566-23887679,23888089-23888553,23888668-23889180 29 6.8
08_01_0186 - 1561695-1561958,1562041-1562183,1562260-1562326,156... 29 6.8
05_07_0305 - 29097478-29097598,29097766-29097866,29098136-290982... 29 6.8
05_04_0149 - 18441561-18442082,18442723-18442861,18443295-184433... 29 6.8
03_06_0205 - 32347636-32347646,32347762-32347801,32347959-323480... 29 6.8
03_05_0232 + 22174516-22174768,22175278-22175471,22175557-221756... 29 6.8
01_01_0955 - 7494486-7496327 29 6.8
01_07_0198 - 41918276-41918408,41918486-41918841,41919091-419192... 28 9.0
01_06_1668 + 38998348-38998434,38999234-38999300,38999377-389994... 28 9.0
01_06_0743 + 31622683-31623723 28 9.0
>04_03_1034 -
21865633-21865811,21865838-21865860,21866345-21866433,
21872484-21872894,21872968-21873284,21873389-21873467,
21873539-21873903,21874484-21874656,21874824-21874913,
21875797-21875862,21876615-21876661
Length = 612
Score = 33.1 bits (72), Expect = 0.32
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +3
Query: 393 AMNKTEENPFLIEDVTNSNVDDKQKADNLNGNTN 494
A NK EE+ +E VT + A+N+NGN N
Sbjct: 460 ARNKKEEHKLAMEGVTEKEMSQTDAAENVNGNVN 493
>01_07_0288 +
42534552-42534558,42535302-42537280,42537367-42537513,
42537982-42538526,42538906-42538981,42539357-42539437
Length = 944
Score = 31.1 bits (67), Expect = 1.3
Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Frame = +3
Query: 213 KRVT-AMNGHIVDNVACGGCHTLLTATKGSNADFTNNDFNIINEATRQ 353
KR+ A+ G V V+CG HT L T G F + F ++ R+
Sbjct: 200 KRIAGALEGLAVAYVSCGTWHTALITTMGQLFTFGDGTFGVLGHGNRE 247
>03_01_0082 +
653041-653137,653219-653496,653596-653689,653804-653886,
654027-654247,654395-654533,654628-654710,654824-655036,
655099-655494,655587-655758,656085-656276,656363-656569,
656661-656753,656957-657156,657329-657838,658114-658184,
658322-658963,659057-659207,659425-659665
Length = 1360
Score = 29.9 bits (64), Expect = 3.0
Identities = 15/52 (28%), Positives = 25/52 (48%)
Frame = +3
Query: 408 EENPFLIEDVTNSNVDDKQKADNLNGNTNEESGSIDSLEANVSGSHIVNIND 563
+ N +ED N ++ DKQ G E GSI + + GS ++++D
Sbjct: 204 KSNTLGVEDYENMHISDKQYITIHLGRLKEHEGSIFRIAWSSDGSKFMSVSD 255
>04_04_1657 -
35102751-35102868,35102987-35103504,35104065-35104211,
35104289-35106262,35106964-35107089,35107178-35107264,
35107335-35107424,35107725-35107811,35108248-35108300,
35109339-35109387
Length = 1082
Score = 29.1 bits (62), Expect = 5.2
Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Frame = +3
Query: 213 KRVTA-MNGHIVDNVACGGCHTLLTATKGSNADFTNNDFNIINEATRQ 353
KRV+ + G V V+CG HT L + G F + F ++ R+
Sbjct: 384 KRVSGPLEGLQVSAVSCGTWHTALITSSGKLYTFGDGTFGVLGHGNRE 431
>04_04_0751 - 27769616-27769684,27769795-27769917,27769998-27770770,
27771407-27771773,27772104-27772217,27772307-27772403,
27772968-27773088,27773168-27773252,27773349-27773498,
27773630-27773746,27773819-27773905,27773981-27774049,
27774125-27774181,27774266-27774349,27774477-27774513,
27774721-27774869,27776053-27776538,27776743-27776886,
27776961-27777509,27778332-27778526,27779226-27779310,
27779570-27779670,27779689-27780360,27781101-27781433,
27781957-27782038,27782258-27782334,27782713-27782817,
27783810-27783944,27784437-27785159,27785882-27786663,
27787480-27789187
Length = 2891
Score = 29.1 bits (62), Expect = 5.2
Identities = 23/64 (35%), Positives = 32/64 (50%), Gaps = 4/64 (6%)
Frame = +3
Query: 357 TLTELPPLQKIPAMN---KTEENPFLIEDVTNSNVDDK-QKADNLNGNTNEESGSIDSLE 524
TL P+ AM+ + E+N L D T S+VDD+ Q+AD GSIDS
Sbjct: 1957 TLPSTAPIITAEAMSVDDRNEDNEQLESDTTQSSVDDRLQQADQ-----QSVKGSIDSRG 2011
Query: 525 ANVS 536
+ +S
Sbjct: 2012 SGIS 2015
>08_02_1042 - 23887566-23887679,23888089-23888553,23888668-23889180
Length = 363
Score = 28.7 bits (61), Expect = 6.8
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +3
Query: 480 NGNTNEESGSIDSLEANVSGSHIVNINDLEIENGSTH 590
NGN +G+ D +A+VSGS ++ D+E+ +H
Sbjct: 243 NGNAVAGAGAGDDADADVSGSKPSSVADIEVTMVESH 279
>08_01_0186 -
1561695-1561958,1562041-1562183,1562260-1562326,
1562417-1562529,1562603-1562671,1563831-1563870,
1563965-1564035,1565872-1566027,1566104-1566152,
1566228-1567631
Length = 791
Score = 28.7 bits (61), Expect = 6.8
Identities = 21/82 (25%), Positives = 40/82 (48%)
Frame = +3
Query: 297 SNADFTNNDFNIINEATRQITLTELPPLQKIPAMNKTEENPFLIEDVTNSNVDDKQKADN 476
SN+ + + N + E I +LPPL PA+ ++E + T+S+ ++ +
Sbjct: 476 SNSSMHHEEGNELVEEDVDIGGNDLPPLTYPPAVFESETAERSSKHSTSSSSSSDSESSS 535
Query: 477 LNGNTNEESGSIDSLEANVSGS 542
+ +++ SGS L+ NV S
Sbjct: 536 SDSDSSSSSGS--DLDVNVPPS 555
>05_07_0305 -
29097478-29097598,29097766-29097866,29098136-29098288,
29098404-29098542,29098649-29098719,29099022-29099333,
29099605-29099903,29100011-29100271,29100365-29100471,
29100588-29100739,29100816-29100970,29102946-29103141,
29103340-29103468,29103540-29103641,29103736-29103889,
29103970-29104058
Length = 846
Score = 28.7 bits (61), Expect = 6.8
Identities = 14/60 (23%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Frame = +3
Query: 396 MNKTEENPFLIEDVTNSNVDDKQKADNLNGNTNEESGSIDSLEANV-SGSHIVNINDLEI 572
M++ N + +TN V ++ ++L +NE + S+D +A V G I ++ ++++
Sbjct: 526 MSRDFLNNIPVAVLTNEFVFSSKEVESLRAKSNESTSSLDHFDAEVEEGEFIPDVENIQL 585
>05_04_0149 -
18441561-18442082,18442723-18442861,18443295-18443352,
18443630-18443664,18444528-18444886,18445304-18445450,
18445849-18447954,18448300-18448494,18448629-18448709,
18448758-18448874,18449281-18449370,18449466-18449552,
18450293-18450315,18450675-18450804
Length = 1362
Score = 28.7 bits (61), Expect = 6.8
Identities = 14/48 (29%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Frame = +3
Query: 213 KRVTA-MNGHIVDNVACGGCHTLLTATKGSNADFTNNDFNIINEATRQ 353
KRV + G V ++CG HT + + G F + F ++ RQ
Sbjct: 476 KRVNGPLEGIHVSAISCGPWHTAIVTSAGQLFTFGDGSFGVLGHGDRQ 523
>03_06_0205 -
32347636-32347646,32347762-32347801,32347959-32348060,
32348473-32348599,32348893-32350835,32351347-32351367
Length = 747
Score = 28.7 bits (61), Expect = 6.8
Identities = 14/51 (27%), Positives = 29/51 (56%)
Frame = -2
Query: 460 LSSTLEFVTSSIKNGFSSVLFIAGIFCKGGNSVRVICLVASLIMLKSLFVK 308
L+S+LE ++++K + + GIF K ++ C++ S++ L FV+
Sbjct: 592 LNSSLEIASAALKEVENKNIDYNGIFTKNEQEKQLECILISIMKLSKEFVE 642
>03_05_0232 +
22174516-22174768,22175278-22175471,22175557-22175604,
22176707-22176784,22178073-22178145,22178406-22178577,
22179652-22180083,22180209-22180400,22180696-22180771
Length = 505
Score = 28.7 bits (61), Expect = 6.8
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +3
Query: 249 NVACGGCHTLLTATKGSNADFTNNDFNIINEATRQ 353
+VACG HT A+ GS + NDF + + T +
Sbjct: 64 DVACGRGHTAAVASDGSLYTWGANDFGQLGDGTEE 98
>01_01_0955 - 7494486-7496327
Length = 613
Score = 28.7 bits (61), Expect = 6.8
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = +3
Query: 297 SNADFTNNDFNIINEATRQITLTELPPLQKIPAMNKTEE 413
SN N+ + + Q L + PPLQK+P + K+ +
Sbjct: 339 SNEATPRNNGGVDSSTATQFQLQKAPPLQKLPQLQKSHQ 377
>01_07_0198 -
41918276-41918408,41918486-41918841,41919091-41919237,
41919666-41921789,41922150-41922344,41922488-41922568,
41923325-41923414,41923507-41923593,41923914-41923961
Length = 1086
Score = 28.3 bits (60), Expect = 9.0
Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Frame = +3
Query: 213 KRVTA-MNGHIVDNVACGGCHTLLTATKGSNADFTNNDFNIINEATR 350
KRV + G V +++CG HT L + G F + F ++ R
Sbjct: 402 KRVDGPLEGIHVSSISCGPWHTALVTSAGQLFTFGDGSFGVLGHGDR 448
>01_06_1668 +
38998348-38998434,38999234-38999300,38999377-38999435,
38999636-38999711,38999856-38999930,39000007-39000094,
39000261-39000486,39000689-39000804,39001172-39001383,
39001882-39001916,39002005-39002107,39002645-39002753,
39002838-39003036
Length = 483
Score = 28.3 bits (60), Expect = 9.0
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = +3
Query: 189 WSPINTPLKRVTAMNGHIVDNVACGGC 269
W IN PL+ TA+NG+ + + A GGC
Sbjct: 172 WITINEPLQ--TAVNGYGIGHFAPGGC 196
>01_06_0743 + 31622683-31623723
Length = 346
Score = 28.3 bits (60), Expect = 9.0
Identities = 16/49 (32%), Positives = 22/49 (44%)
Frame = +2
Query: 167 DDTNSNEVVPNQYTP*TGHRHEWAHRRQCGVWGLPHSTYGHQRLERGLH 313
D TNSN P +G +H R G++G P +Y RG+H
Sbjct: 64 DATNSNRASDEFSRPSSGG----SHNRGYGLYGRPEESYPEAYFRRGVH 108
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,759,005
Number of Sequences: 37544
Number of extensions: 412953
Number of successful extensions: 1098
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1051
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1098
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2612387020
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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