Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP17_F_E21
         (917 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    27   0.32 
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    27   0.32 
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          25   1.3  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             25   1.3  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   2.9  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    23   2.9  
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    22   6.8  

>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 26.6 bits (56), Expect = 0.32
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = -3

Query: 189 TSFELVSSISSKHSLLCLDSPHVYSSPLSEIQNIKRK 79
           T+  +  S+S+  +L+CL SP +Y       +NI+RK
Sbjct: 738 TTLCVAISLSATVTLVCLYSPKIYIILFQPDKNIRRK 774


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 26.6 bits (56), Expect = 0.32
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = -3

Query: 189 TSFELVSSISSKHSLLCLDSPHVYSSPLSEIQNIKRK 79
           T+  +  S+S+  +L+CL SP +Y       +NI+RK
Sbjct: 828 TTLCVAISLSATVTLVCLYSPKIYIILFQPDKNIRRK 864


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 24.6 bits (51), Expect = 1.3
 Identities = 14/50 (28%), Positives = 22/50 (44%)
 Frame = +3

Query: 441 NSNVDDKQKADNLNGNTNEESGSIDSLEANVSGSHIVNINDLEIENGSTH 590
           N+N +     +N N N N  +G+ D+   N   S+  N  D+    G  H
Sbjct: 232 NANTNASNNNNNNNNNNNNNNGANDNGNGN-GASNNNNNGDMFCHTGLGH 280


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 24.6 bits (51), Expect = 1.3
 Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
 Frame = +2

Query: 224  RHEWAHRRQCGVWGLPHSTYGHQRLERGLHEQRFQHY*RS-HQTNNSHRITALTENTS 394
            R E +  R    +G+PHST  ++  ER L   R +   +S  +T  +  +TA    T+
Sbjct: 1057 RGEMSVHRAGSYYGVPHSTLEYKVKERHLMRPRKRDQKQSDDKTKETSTVTAAAAATN 1114


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 23.4 bits (48), Expect = 2.9
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = +3

Query: 699 TXVHDSVKEVTDTVHEKRK*LXXYSQNGSKCKRAXR 806
           T +  S K  TDT  E  +    Y  +G+K K+  R
Sbjct: 62  TELGASTKLATDTTSENEENYPHYQMSGAKQKKKKR 97


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 23.4 bits (48), Expect = 2.9
 Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = +3

Query: 453 DDKQKADNLNGNTNEES-GSIDSLEANV 533
           D K+K D  NG T EE+  SI S +A +
Sbjct: 374 DIKEKCDRRNGKTTEENPKSIKSGDAAI 401


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 22.2 bits (45), Expect = 6.8
 Identities = 15/68 (22%), Positives = 30/68 (44%)
 Frame = +3

Query: 315 NNDFNIINEATRQITLTELPPLQKIPAMNKTEENPFLIEDVTNSNVDDKQKADNLNGNTN 494
           N+DFN  +   R +       ++    +N  + +   I++  N N D+ QK +  N N  
Sbjct: 388 NDDFNFDDVNFRILGANVKELIRNTHCVNNNQNDN--IQNTNNQN-DNNQKNNKKNANNQ 444

Query: 495 EESGSIDS 518
           + +   D+
Sbjct: 445 KNNNQNDN 452


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 218,572
Number of Sequences: 438
Number of extensions: 4662
Number of successful extensions: 10
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29871933
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)