Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP17_F_E20
         (885 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11G7.06c |mug132||S. pombe specific UPF0300 family protein 3...    27   4.7  
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca...    27   4.7  
SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase ...    26   6.2  
SPAC23H3.12c |||conserved protein |Schizosaccharomyces pombe|chr...    26   8.2  
SPAC6B12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyces...    26   8.2  

>SPAC11G7.06c |mug132||S. pombe specific UPF0300 family protein
           3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 430

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 16/47 (34%), Positives = 24/47 (51%)
 Frame = -2

Query: 746 WIILCSL*F*PLCHLEIFFLQDTVAV*PAALPFFSLLDSFESMLSIS 606
           W+I+CS  F  L HLE+    DT+ +      +F+L  S  S   +S
Sbjct: 246 WLIICSKQFQALVHLEV--KMDTLKIFRRRSKYFNLARSCVSGFELS 290


>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
            synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 2410

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
 Frame = -1

Query: 480  WQKHCIILYFNVWNWACLN--FDFGSRNRTWNLCWFGV 373
            WQ   +I+ F +  WA L     + SR  +W +C FGV
Sbjct: 2232 WQIFLLIVAFYIVLWALLLGVLAWISRTHSWIICVFGV 2269


>SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase
           Cho2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 905

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = +2

Query: 155 LTISTLKSNILK*FQDFSAINNVD*RRILGLCYLFWRVNY 274
           + IS++ + +L  F    A+     R  + LC+ FWR++Y
Sbjct: 106 IVISSILAQVLLFFMTTGAVR----RYSMMLCFFFWRISY 141


>SPAC23H3.12c |||conserved protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 226

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 16/38 (42%), Positives = 20/38 (52%)
 Frame = +2

Query: 311 IAKVD*LTKTMESHQALELHHTPNQQRFQVLFLLPKSK 424
           IA V  L  T E HQ L + H PN +   +L  L +SK
Sbjct: 76  IAPVKKLNDT-ELHQTLYIEHPPNLESSTILAELNRSK 112


>SPAC6B12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 456

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = +1

Query: 328 ANKDNGKPSSPGITPYTKPTKIPGSVSTAKIKVETC 435
           +N  +  PS+P  +    PT    SVS +   VETC
Sbjct: 101 SNYASNVPSTPSDSTQQPPTNTLPSVSASSQSVETC 136


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,860,630
Number of Sequences: 5004
Number of extensions: 50290
Number of successful extensions: 124
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 444486180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)