Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP17_F_E19
         (878 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1529.01 ||SPCC794.14|membrane transporter|Schizosaccharomyce...    36   0.010
SPBC3E7.06c |||membrane transporter|Schizosaccharomyces pombe|ch...    33   0.054
SPCC569.05c |||spermidine family transporter |Schizosaccharomyce...    29   0.66 
SPAC4F8.15 |itr1|SPAC7D4.01|myo-inositol transporter Itr1|Schizo...    29   0.66 
SPAC20G8.03 |itr2||MFS myo-inositol transporter|Schizosaccharomy...    28   1.5  
SPBC36.03c |||spermidine family transporter |Schizosaccharomyces...    28   1.5  
SPBC6B1.06c |ubp14|ucp2|ubiquitin C-terminal hydrolase Ubp14|Sch...    27   4.7  
SPBC36.02c |||spermidine family transporter |Schizosaccharomyces...    26   6.1  

>SPCC1529.01 ||SPCC794.14|membrane transporter|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 462

 Score = 35.5 bits (78), Expect = 0.010
 Identities = 18/46 (39%), Positives = 31/46 (67%)
 Frame = +1

Query: 532 QLPTKGSWIVSIMILCSALTPIPSAYLADKFGRKTTLLLGAIPFII 669
           Q  T+ + I+SI +L  A++P+ SA L++ FGR+  L +G + FI+
Sbjct: 79  QNSTEKALILSIYLLVFAISPMISAPLSEVFGRRMLLQVGNVIFIV 124


>SPBC3E7.06c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 577

 Score = 33.1 bits (72), Expect = 0.054
 Identities = 26/88 (29%), Positives = 43/88 (48%), Gaps = 1/88 (1%)
 Frame = +1

Query: 439 VRPSLLQQPVLATVGRLLLYCILNQKKVQYQQLPTKGSWIVSI-MILCSALTPIPSAYLA 615
           V P+LL   VLA +   ++     +   ++ +  ++ SW  +  MI C+A  P+   +  
Sbjct: 91  VLPALLLGVVLAALDNTIVASTYTKIGAEFGKF-SQVSWTATAYMISCTAFQPLFGKF-C 148

Query: 616 DKFGRKTTLLLGAIPFIIGWILVIVAKS 699
           D +GRK TLL     F IG  L   ++S
Sbjct: 149 DIYGRKKTLLAAYCVFGIGCFLCGTSRS 176


>SPCC569.05c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 576

 Score = 29.5 bits (63), Expect = 0.66
 Identities = 21/53 (39%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
 Frame = +1

Query: 550 SWIVSIMILCSALT-PIPSAYLADKFGRKTTLLLGAIPFIIGWILVIVAKSCQ 705
           S +   + LC  +  PI  A L++  GRK  LL+G   F I  I V VAK  Q
Sbjct: 172 SLLTMTVFLCGYIAGPIVWAPLSELSGRKLPLLIGMFGFGIFNISVAVAKDIQ 224


>SPAC4F8.15 |itr1|SPAC7D4.01|myo-inositol transporter
           Itr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 575

 Score = 29.5 bits (63), Expect = 0.66
 Identities = 17/47 (36%), Positives = 26/47 (55%)
 Frame = +1

Query: 553 WIVSIMILCSALTPIPSAYLADKFGRKTTLLLGAIPFIIGWILVIVA 693
           +I S   L + L  I +  LAD FGRK  + + +I  I+G I+ + A
Sbjct: 131 FITSATSLGALLGGIIAGALADFFGRKPVIAIASIIIIVGSIVQVTA 177


>SPAC20G8.03 |itr2||MFS myo-inositol transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 557

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 14/48 (29%), Positives = 25/48 (52%)
 Frame = +1

Query: 556 IVSIMILCSALTPIPSAYLADKFGRKTTLLLGAIPFIIGWILVIVAKS 699
           I S     + ++   S +LAD  GRK  LL     F+IG +++  +++
Sbjct: 125 ITSATSFAALISATTSGWLADWVGRKRLLLCADAIFVIGSVIMAASRN 172


>SPBC36.03c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 538

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 18/49 (36%), Positives = 26/49 (53%)
 Frame = +1

Query: 559 VSIMILCSALTPIPSAYLADKFGRKTTLLLGAIPFIIGWILVIVAKSCQ 705
           +S+ +   A  PI  A +++  GRK  L++G   F I  I V VAK  Q
Sbjct: 139 MSLYVCGFASGPILWAPISELVGRKIPLIVGMFMFSIFSIAVAVAKDVQ 187


>SPBC6B1.06c |ubp14|ucp2|ubiquitin C-terminal hydrolase
           Ubp14|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 775

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 14/34 (41%), Positives = 16/34 (47%), Gaps = 2/34 (5%)
 Frame = +1

Query: 727 LRPGLWSCVHCGSDVYGRNSYE*XRGAYH--SHY 822
           L   LW C+ CG+   GR  Y    G  H  SHY
Sbjct: 179 LAENLWMCLTCGALSCGRKQYGGGGGNGHALSHY 212


>SPBC36.02c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 577

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 17/49 (34%), Positives = 26/49 (53%)
 Frame = +1

Query: 559 VSIMILCSALTPIPSAYLADKFGRKTTLLLGAIPFIIGWILVIVAKSCQ 705
           +++ +L     PI  A L++  GRK  +L+G + F I  I V V K  Q
Sbjct: 177 MTVFLLGYCSGPIIWAPLSELSGRKPPILIGMLGFGIFNISVAVGKDIQ 225


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,068,992
Number of Sequences: 5004
Number of extensions: 59933
Number of successful extensions: 164
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 440481800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)