Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP17_F_E19
(878 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF002196-9|AAV34797.1| 475|Caenorhabditis elegans Hypothetical ... 35 0.067
AF002196-8|AAB53976.2| 586|Caenorhabditis elegans Hypothetical ... 35 0.067
AF142441-1|AAF66614.1| 701|Caenorhabditis elegans H+/oligopepti... 33 0.20
AF003146-1|AAB54202.1| 701|Caenorhabditis elegans Oligopeptide ... 33 0.20
AF039046-2|AAB94218.2| 516|Caenorhabditis elegans Hypothetical ... 31 1.4
AL021497-3|CAA16405.1| 613|Caenorhabditis elegans Hypothetical ... 30 1.9
Z75533-2|CAA99816.1| 245|Caenorhabditis elegans Hypothetical pr... 30 2.5
AL021497-13|CAA16411.2| 550|Caenorhabditis elegans Hypothetical... 29 4.4
U28735-4|AAF99953.1| 488|Caenorhabditis elegans Hypothetical pr... 29 5.8
AF047657-7|AAK18943.1| 424|Caenorhabditis elegans Hypothetical ... 29 5.8
>AF002196-9|AAV34797.1| 475|Caenorhabditis elegans Hypothetical
protein C09D4.1b protein.
Length = 475
Score = 35.1 bits (77), Expect = 0.067
Identities = 18/46 (39%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
Frame = +1
Query: 553 WIVSIMILCSALTPIPSAYLADKFGRKTTLLLGAIPFIIG-WILVI 687
W I +L L IP+A+L DK+G + ++LLGA+ +G WI ++
Sbjct: 80 WTSMIYMLTYILFFIPAAWLLDKWGLRLSVLLGALGNCVGAWIKLL 125
>AF002196-8|AAB53976.2| 586|Caenorhabditis elegans Hypothetical
protein C09D4.1a protein.
Length = 586
Score = 35.1 bits (77), Expect = 0.067
Identities = 18/46 (39%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
Frame = +1
Query: 553 WIVSIMILCSALTPIPSAYLADKFGRKTTLLLGAIPFIIG-WILVI 687
W I +L L IP+A+L DK+G + ++LLGA+ +G WI ++
Sbjct: 191 WTSMIYMLTYILFFIPAAWLLDKWGLRLSVLLGALGNCVGAWIKLL 236
>AF142441-1|AAF66614.1| 701|Caenorhabditis elegans H+/oligopeptide
symporter OPT-3 protein.
Length = 701
Score = 33.5 bits (73), Expect = 0.20
Identities = 15/55 (27%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Frame = +1
Query: 523 QYQQLPTKGSWIVSIMILCSALTPIPSAYLADK-FGRKTTLLLGAIPFIIGWILV 684
+++ P+K ++I + + LTP+ + +AD FGR +L G+ +++G +L+
Sbjct: 45 EHEFSPSKATFIYHLFTCIAYLTPLIGSIMADSVFGRFKVILYGSSIYVVGHVLL 99
>AF003146-1|AAB54202.1| 701|Caenorhabditis elegans Oligopeptide
transporter protein 3 protein.
Length = 701
Score = 33.5 bits (73), Expect = 0.20
Identities = 15/55 (27%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Frame = +1
Query: 523 QYQQLPTKGSWIVSIMILCSALTPIPSAYLADK-FGRKTTLLLGAIPFIIGWILV 684
+++ P+K ++I + + LTP+ + +AD FGR +L G+ +++G +L+
Sbjct: 45 EHEFSPSKATFIYHLFTCIAYLTPLIGSIMADSVFGRFKVILYGSSIYVVGHVLL 99
>AF039046-2|AAB94218.2| 516|Caenorhabditis elegans Hypothetical
protein R09B5.11 protein.
Length = 516
Score = 30.7 bits (66), Expect = 1.4
Identities = 14/32 (43%), Positives = 21/32 (65%)
Frame = +1
Query: 601 SAYLADKFGRKTTLLLGAIPFIIGWILVIVAK 696
S +LADKFGRK+TLL I ++ + + +K
Sbjct: 118 SGFLADKFGRKSTLLYNNILALLAAVCLSTSK 149
>AL021497-3|CAA16405.1| 613|Caenorhabditis elegans Hypothetical
protein Y51A2D.5 protein.
Length = 613
Score = 30.3 bits (65), Expect = 1.9
Identities = 11/47 (23%), Positives = 23/47 (48%)
Frame = +1
Query: 553 WIVSIMILCSALTPIPSAYLADKFGRKTTLLLGAIPFIIGWILVIVA 693
WI I+ +C+ + P + +K GR+ L ++ +L+ V+
Sbjct: 320 WISVILSICNLIGPFAPMFFIEKLGRRKLFLFSCAGVVVSLVLIGVS 366
>Z75533-2|CAA99816.1| 245|Caenorhabditis elegans Hypothetical
protein C54G4.3 protein.
Length = 245
Score = 29.9 bits (64), Expect = 2.5
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = +3
Query: 495 LLYLESEESSIPTTAYQGIMDSLNNDTLLGSN 590
L Y ESS T+AY S NN ++ GSN
Sbjct: 214 LKYSSGPESSFSTSAYTSFSKSANNSSMSGSN 245
>AL021497-13|CAA16411.2| 550|Caenorhabditis elegans Hypothetical
protein Y51A2D.18 protein.
Length = 550
Score = 29.1 bits (62), Expect = 4.4
Identities = 9/30 (30%), Positives = 21/30 (70%)
Frame = +1
Query: 610 LADKFGRKTTLLLGAIPFIIGWILVIVAKS 699
++D FGRK + ++ +IGW++V+ +++
Sbjct: 149 ISDSFGRKIGSQVASLGMLIGWLIVVQSRN 178
>U28735-4|AAF99953.1| 488|Caenorhabditis elegans Hypothetical
protein F48E3.2 protein.
Length = 488
Score = 28.7 bits (61), Expect = 5.8
Identities = 18/61 (29%), Positives = 31/61 (50%)
Frame = +1
Query: 550 SWIVSIMILCSALTPIPSAYLADKFGRKTTLLLGAIPFIIGWILVIVAKSCQCCTSRGFL 729
S +++I + A + SA +AD+ GRK TL LG ++ ++ + A + GF
Sbjct: 61 SAMLAIYFIGFAAGSVISAGVADRIGRKWTLFLGTCGSLLSSLIALFAIILKMPLMFGFS 120
Query: 730 R 732
R
Sbjct: 121 R 121
>AF047657-7|AAK18943.1| 424|Caenorhabditis elegans Hypothetical
protein F37B4.7 protein.
Length = 424
Score = 28.7 bits (61), Expect = 5.8
Identities = 15/53 (28%), Positives = 24/53 (45%)
Frame = +1
Query: 541 TKGSWIVSIMILCSALTPIPSAYLADKFGRKTTLLLGAIPFIIGWILVIVAKS 699
T S + I +T IP+ L D F K L+ A + + W++ + KS
Sbjct: 40 TLNSQVYPIWTYSYLITLIPAFLLTDVFLYKPLLVFEAFSYFLCWVIFVFGKS 92
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,526,769
Number of Sequences: 27780
Number of extensions: 319794
Number of successful extensions: 799
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 753
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 797
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2213393798
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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