Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP17_F_E18
         (879 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1B1.01 |||transcription factor Rdp1|Schizosaccharomyces pomb...    29   0.87 
SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr...    28   2.0  
SPBC21C3.09c |||fumarylacetoacetate |Schizosaccharomyces pombe|c...    26   6.1  

>SPAC1B1.01 |||transcription factor Rdp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 478

 Score = 29.1 bits (62), Expect = 0.87
 Identities = 18/58 (31%), Positives = 28/58 (48%)
 Frame = -3

Query: 520 PGDTIDLGSSISKAAIFPIANPYPE*TSGNPTDRPTIPGKAATLAICFTPGRNPPDIP 347
           P DTI  G+S++++      +  PE    NP+    +   A   A   T G NPP++P
Sbjct: 246 PSDTIPPGASMARSD----PSQVPE---SNPSAAAAVAAAAVAAAANLTNGVNPPEVP 296


>SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 583

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = -1

Query: 843 CAQLR*TSFLCSETDF*WISIQHSFHILHSVPYLRPKHNLP 721
           C ++R TS+ C    F   S+Q SFH    + + R  +NLP
Sbjct: 12  CLKVR-TSYKCFVKYFPKCSVQSSFHSYDELAFSRRLYNLP 51


>SPBC21C3.09c |||fumarylacetoacetate |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 221

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
 Frame = +3

Query: 579 KDVLPIKEQLAQ-SLFDHIPVGVGSKGIIPMNARDLE-EALEMGMDWSLREGY 731
           KD LP +  ++  S  D I  G    GI  M AR+++ EA + G+ WS  +GY
Sbjct: 67  KDRLPARRPVSSNSWLDSI--GAYFVGI-DMTARNIQNEAKKKGLPWSFAKGY 116


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,819,536
Number of Sequences: 5004
Number of extensions: 86446
Number of successful extensions: 197
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 187
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 196
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 440481800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)