Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP17_F_E18
         (879 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81505-2|CAB04121.2|  505|Caenorhabditis elegans Hypothetical pr...   314   7e-86
AL132898-14|CAC14406.1| 1641|Caenorhabditis elegans Hypothetical...    32   0.47 
Z73424-2|CAA97780.1|  287|Caenorhabditis elegans Hypothetical pr...    28   7.7  

>Z81505-2|CAB04121.2|  505|Caenorhabditis elegans Hypothetical
           protein F16A11.2 protein.
          Length = 505

 Score =  314 bits (770), Expect = 7e-86
 Identities = 143/231 (61%), Positives = 178/231 (77%)
 Frame = +3

Query: 186 RQYNEELKYLEKINPYCWRIKKGFQPNMNVEGVFYVNSTLEKLMLEELRNCCRPGMSGGF 365
           R + EE  +++++    +RIKKGF PNMNVEG FYVN++LE+LM +EL+  C     GGF
Sbjct: 3   RTFEEECDFIDRLTDTKFRIKKGFVPNMNVEGRFYVNNSLEQLMFDELKFSCDGQGIGGF 62

Query: 366 LPGVKQIANVAALPGIVGRSVGLPDVHSGYGFAIGNMAAFDMDDPKSIVSPGGVGFDINC 545
           LP V+QIANVA+LPGIVG S+GLPD+HSGYGF+IGN+AAFD+ +P+S++SPGGVGFDINC
Sbjct: 63  LPAVRQIANVASLPGIVGHSIGLPDIHSGYGFSIGNIAAFDVGNPESVISPGGVGFDINC 122

Query: 546 GVRLLRTNLHEKDVLPIKEQLAQSLFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLRE 725
           GVRLLRTNL E++V P+KEQL QSLFDHIPVGVGS+G IPM A DL E LEMGMDW+LRE
Sbjct: 123 GVRLLRTNLFEENVKPLKEQLTQSLFDHIPVGVGSRGAIPMLASDLVECLEMGMDWTLRE 182

Query: 726 GYVWAEDKEHCEEYGKNVECXXXXXXXXXXXXXXXXXGHTRSWNHYAEIKL 878
           GY WAEDKEHCEEYG+ ++                  G   + NHYAE+++
Sbjct: 183 GYSWAEDKEHCEEYGRMLQADASKVSLRAKKRGLPQLGTLGAGNHYAEVQV 233


>AL132898-14|CAC14406.1| 1641|Caenorhabditis elegans Hypothetical
           protein Y59A8B.1a protein.
          Length = 1641

 Score = 32.3 bits (70), Expect = 0.47
 Identities = 20/72 (27%), Positives = 35/72 (48%), Gaps = 2/72 (2%)
 Frame = -3

Query: 727 PSLRDQSIPISNASSKSRAFIGIIPLEPTPTGIWSNKL*ANCS--LIGRTSFSCKFVLNK 554
           P  R + IP+   +S + +F G++P  P P  + ++   A  S  ++   SFS       
Sbjct: 311 PQPRPRPIPVPPTTSYNSSFCGLLPPPPVPPDLRASAASAAASPPMVQDASFSSVLTPKT 370

Query: 553 RTPQFISNPTPP 518
           + P+ I  P+PP
Sbjct: 371 KAPEKI--PSPP 380


>Z73424-2|CAA97780.1|  287|Caenorhabditis elegans Hypothetical
           protein C44B9.3 protein.
          Length = 287

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 11/44 (25%), Positives = 21/44 (47%)
 Frame = -3

Query: 601 SLIGRTSFSCKFVLNKRTPQFISNPTPPGDTIDLGSSISKAAIF 470
           +L   T   C ++ +++ P+F   P P  ++  LG   S   +F
Sbjct: 187 ALTSTTVLLCVYISDRKKPEFFDMPLPQANSTVLGGRSSDTGLF 230


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,721,821
Number of Sequences: 27780
Number of extensions: 478874
Number of successful extensions: 1229
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1226
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2213393798
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)