Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP17_F_E15
         (909 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.24c |atg8||autophagy associated protein Atg8 |Schizosacc...    96   7e-21
SPAC6C3.02c |||CHCH domain protein|Schizosaccharomyces pombe|chr...    27   4.9  
SPBC2F12.15c |||palmitoyltransferase|Schizosaccharomyces pombe|c...    27   4.9  
SPAC23C11.11 |cka1|orb5|serine/threonine protein kinase Cka1|Sch...    26   8.5  
SPBC428.05c |arg12||argininosuccinate synthase |Schizosaccharomy...    26   8.5  

>SPBP8B7.24c |atg8||autophagy associated protein Atg8
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 121

 Score = 95.9 bits (228), Expect = 7e-21
 Identities = 44/105 (41%), Positives = 70/105 (66%)
 Frame = +1

Query: 85  RKEEVMAIKSKFPTKIPLIVERYHKERNLPTLDKKKFLVPEDITMSQFLVIIRNRIRVKP 264
           RK E   I+ K+P +IP+I E+  K  ++  +DKKK+LVP D+T+ QF+ +IR RI++ P
Sbjct: 14  RKTESQRIREKYPDRIPVICEKVDKS-DIAAIDKKKYLVPSDLTVGQFVYVIRKRIKLSP 72

Query: 265 NQALYLIINNRSMLSMSLTMAQAYENYGDEDGFLYITYASQEVFG 399
            +A+++ I+     + +L M+  YE +  EDGFLYITY+ +  FG
Sbjct: 73  EKAIFIFIDEILPPTAAL-MSTIYEEHKSEDGFLYITYSGENTFG 116



 Score = 55.6 bits (128), Expect = 9e-09
 Identities = 24/75 (32%), Positives = 47/75 (62%), Gaps = 1/75 (1%)
 Frame = +1

Query: 400 YQDDMQ-EKSNREVEAIRHRFPNKVPLYVTRYVRDREVPVLGRTKFLVPQELTMSQFLYI 576
           ++DD   EK   E + IR ++P+++P+ +   V   ++  + + K+LVP +LT+ QF+Y+
Sbjct: 5   FKDDFSFEKRKTESQRIREKYPDRIPV-ICEKVDKSDIAAIDKKKYLVPSDLTVGQFVYV 63

Query: 577 IRTKMKLRDSQGIVL 621
           IR ++KL   + I +
Sbjct: 64  IRKRIKLSPEKAIFI 78



 Score = 38.7 bits (86), Expect = 0.001
 Identities = 14/44 (31%), Positives = 30/44 (68%)
 Frame = +2

Query: 608 RALYLLVNDKVLASHSMTMAQAYQQFRSHDGYLHITYAAQQVFG 739
           +A+++ + D++L   +  M+  Y++ +S DG+L+ITY+ +  FG
Sbjct: 74  KAIFIFI-DEILPPTAALMSTIYEEHKSEDGFLYITYSGENTFG 116


>SPAC6C3.02c |||CHCH domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 172

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = -1

Query: 597 EFHLCSYNVQKLRHCEFLW 541
           EF  CSY +++L+ C+ +W
Sbjct: 150 EFSQCSYYLEQLKACQAMW 168


>SPBC2F12.15c |||palmitoyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 329

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 9/19 (47%), Positives = 16/19 (84%)
 Frame = -1

Query: 207 FRD*KFFFVQCWQISLFMI 151
           FR+ KFFF++C+ ++L+ I
Sbjct: 136 FRNHKFFFLECFYLNLYSI 154


>SPAC23C11.11 |cka1|orb5|serine/threonine protein kinase
           Cka1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 332

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 13/43 (30%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
 Frame = +1

Query: 292 NRSMLSMSLTMAQAYENYGDEDGFLYITYAS-QEVFGYQDDMQ 417
           N++  +  +++++ Y +  +E    Y  Y + QEVFGYQD+ +
Sbjct: 2   NQTEAAPVVSVSRVYAHVNEEMPREYWDYENMQEVFGYQDNYE 44


>SPBC428.05c |arg12||argininosuccinate synthase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 410

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -2

Query: 458 KRCLMASTSRFDFSCISSW 402
           KRC++A +   D SCI +W
Sbjct: 6   KRCVLAYSGGLDTSCILAW 24


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,461,426
Number of Sequences: 5004
Number of extensions: 73321
Number of successful extensions: 227
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 203
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 224
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 460503700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)