Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP17_F_E15
(909 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z69385-5|CAA93421.1| 130|Caenorhabditis elegans Hypothetical pr... 114 9e-26
U23511-11|AAC46797.1| 123|Caenorhabditis elegans Lc3, gabarap a... 99 5e-21
AF326943-1|AAG49393.1| 123|Caenorhabditis elegans GABA A recept... 99 5e-21
Z81544-3|CAB04435.1| 255|Caenorhabditis elegans Hypothetical pr... 32 0.49
Z81074-7|CAB03042.1| 495|Caenorhabditis elegans Hypothetical pr... 30 2.0
U97196-1|AAK68667.2| 3279|Caenorhabditis elegans Hypothetical pr... 29 6.1
Z92847-6|CAB07423.1| 1076|Caenorhabditis elegans Hypothetical pr... 28 8.0
Z73911-9|CAA98143.1| 1076|Caenorhabditis elegans Hypothetical pr... 28 8.0
AL132951-2|CAC44305.1| 561|Caenorhabditis elegans Hypothetical ... 28 8.0
>Z69385-5|CAA93421.1| 130|Caenorhabditis elegans Hypothetical
protein ZK593.6 protein.
Length = 130
Score = 114 bits (274), Expect = 9e-26
Identities = 48/105 (45%), Positives = 77/105 (73%)
Frame = +1
Query: 85 RKEEVMAIKSKFPTKIPLIVERYHKERNLPTLDKKKFLVPEDITMSQFLVIIRNRIRVKP 264
R+++V I+S+ P K+P+I+ER+ ER+LP +D+ KFLVPE IT+++ + I+R R+++ P
Sbjct: 26 RQKDVEEIRSQQPNKVPVIIERFDGERSLPLMDRCKFLVPEHITVAELMSIVRRRLQLHP 85
Query: 265 NQALYLIINNRSMLSMSLTMAQAYENYGDEDGFLYITYASQEVFG 399
QA +L++N RSM+S S++M+ Y D DGF+Y+ Y SQ FG
Sbjct: 86 QQAFFLLVNERSMVSNSMSMSNLYSQERDPDGFVYMVYTSQPAFG 130
Score = 61.3 bits (142), Expect = 9e-10
Identities = 25/70 (35%), Positives = 46/70 (65%)
Frame = +1
Query: 430 REVEAIRHRFPNKVPLYVTRYVRDREVPVLGRTKFLVPQELTMSQFLYIIRTKMKLRDSQ 609
++VE IR + PNKVP+ + R+ +R +P++ R KFLVP+ +T+++ + I+R +++L Q
Sbjct: 28 KDVEEIRSQQPNKVPVIIERFDGERSLPLMDRCKFLVPEHITVAELMSIVRRRLQLHPQQ 87
Query: 610 GIVLACERQS 639
L +S
Sbjct: 88 AFFLLVNERS 97
Score = 46.4 bits (105), Expect = 3e-05
Identities = 18/44 (40%), Positives = 31/44 (70%)
Frame = +2
Query: 608 RALYLLVNDKVLASHSMTMAQAYQQFRSHDGYLHITYAAQQVFG 739
+A +LLVN++ + S+SM+M+ Y Q R DG++++ Y +Q FG
Sbjct: 87 QAFFLLVNERSMVSNSMSMSNLYSQERDPDGFVYMVYTSQPAFG 130
>U23511-11|AAC46797.1| 123|Caenorhabditis elegans Lc3, gabarap and
gate-16 familyprotein 1 protein.
Length = 123
Score = 98.7 bits (235), Expect = 5e-21
Identities = 48/112 (42%), Positives = 76/112 (67%)
Frame = +1
Query: 85 RKEEVMAIKSKFPTKIPLIVERYHKERNLPTLDKKKFLVPEDITMSQFLVIIRNRIRVKP 264
R+ E I+ K+P +IP+IVE+ K + L LDKKK+LVP D+T+ QF +IR RI+++P
Sbjct: 14 RRAEGDKIRRKYPDRIPVIVEKAPKSK-LHDLDKKKYLVPSDLTVGQFYFLIRKRIQLRP 72
Query: 265 NQALYLIINNRSMLSMSLTMAQAYENYGDEDGFLYITYASQEVFGYQDDMQE 420
AL+ +NN +M+ TM Q Y+++ +ED FLYI Y+ + V+G + + +E
Sbjct: 73 EDALFFFVNNVIPQTMT-TMGQLYQDHHEEDLFLYIAYSDESVYGGEVEKKE 123
Score = 48.8 bits (111), Expect = 5e-06
Identities = 21/66 (31%), Positives = 42/66 (63%)
Frame = +1
Query: 418 EKSNREVEAIRHRFPNKVPLYVTRYVRDREVPVLGRTKFLVPQELTMSQFLYIIRTKMKL 597
EK E + IR ++P+++P+ V + + + + L + K+LVP +LT+ QF ++IR +++L
Sbjct: 12 EKRRAEGDKIRRKYPDRIPVIVEKAPKSK-LHDLDKKKYLVPSDLTVGQFYFLIRKRIQL 70
Query: 598 RDSQGI 615
R +
Sbjct: 71 RPEDAL 76
Score = 34.7 bits (76), Expect = 0.092
Identities = 17/48 (35%), Positives = 27/48 (56%)
Frame = +2
Query: 611 ALYLLVNDKVLASHSMTMAQAYQQFRSHDGYLHITYAAQQVFGMNVKE 754
AL+ VN+ V+ TM Q YQ D +L+I Y+ + V+G V++
Sbjct: 75 ALFFFVNN-VIPQTMTTMGQLYQDHHEEDLFLYIAYSDESVYGGEVEK 121
>AF326943-1|AAG49393.1| 123|Caenorhabditis elegans GABA A
receptor-associated protein protein.
Length = 123
Score = 98.7 bits (235), Expect = 5e-21
Identities = 48/112 (42%), Positives = 76/112 (67%)
Frame = +1
Query: 85 RKEEVMAIKSKFPTKIPLIVERYHKERNLPTLDKKKFLVPEDITMSQFLVIIRNRIRVKP 264
R+ E I+ K+P +IP+IVE+ K + L LDKKK+LVP D+T+ QF +IR RI+++P
Sbjct: 14 RRAEGDKIRRKYPDRIPVIVEKAPKSK-LHDLDKKKYLVPSDLTVGQFYFLIRKRIQLRP 72
Query: 265 NQALYLIINNRSMLSMSLTMAQAYENYGDEDGFLYITYASQEVFGYQDDMQE 420
AL+ +NN +M+ TM Q Y+++ +ED FLYI Y+ + V+G + + +E
Sbjct: 73 EDALFFFVNNVIPQTMT-TMGQLYQDHHEEDLFLYIAYSDESVYGGEVEKKE 123
Score = 48.8 bits (111), Expect = 5e-06
Identities = 21/66 (31%), Positives = 42/66 (63%)
Frame = +1
Query: 418 EKSNREVEAIRHRFPNKVPLYVTRYVRDREVPVLGRTKFLVPQELTMSQFLYIIRTKMKL 597
EK E + IR ++P+++P+ V + + + + L + K+LVP +LT+ QF ++IR +++L
Sbjct: 12 EKRRAEGDKIRRKYPDRIPVIVEKAPKSK-LHDLDKKKYLVPSDLTVGQFYFLIRKRIQL 70
Query: 598 RDSQGI 615
R +
Sbjct: 71 RPEDAL 76
Score = 34.7 bits (76), Expect = 0.092
Identities = 17/48 (35%), Positives = 27/48 (56%)
Frame = +2
Query: 611 ALYLLVNDKVLASHSMTMAQAYQQFRSHDGYLHITYAAQQVFGMNVKE 754
AL+ VN+ V+ TM Q YQ D +L+I Y+ + V+G V++
Sbjct: 75 ALFFFVNN-VIPQTMTTMGQLYQDHHEEDLFLYIAYSDESVYGGEVEK 121
>Z81544-3|CAB04435.1| 255|Caenorhabditis elegans Hypothetical
protein F49C5.7 protein.
Length = 255
Score = 32.3 bits (70), Expect = 0.49
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Frame = -2
Query: 701 SHRESGTAGTPAPSSYCGSPKLCRSQASTMPCESRSFIFVLIMYRN-CDIVSS 546
S+ +S + TP+PSS + +S +T P + FI + Y++ C +SS
Sbjct: 50 SNTDSSSTATPSPSSASSTTPTAQSSTATSPAMTSPFIQTPVFYKSKCFTISS 102
>Z81074-7|CAB03042.1| 495|Caenorhabditis elegans Hypothetical
protein F32B6.8b protein.
Length = 495
Score = 30.3 bits (65), Expect = 2.0
Identities = 11/26 (42%), Positives = 19/26 (73%)
Frame = +3
Query: 330 SLRKLWG*RWIPLHHLRLSRGVRLPG 407
S++ ++G R+ PLHH ++GV +PG
Sbjct: 12 SVKPVYGARYPPLHHASPTKGVEIPG 37
>U97196-1|AAK68667.2| 3279|Caenorhabditis elegans Hypothetical protein
B0207.5 protein.
Length = 3279
Score = 28.7 bits (61), Expect = 6.1
Identities = 11/22 (50%), Positives = 17/22 (77%)
Frame = +1
Query: 142 VERYHKERNLPTLDKKKFLVPE 207
+E+YHK+RN+ + K + LVPE
Sbjct: 3258 MEKYHKDRNVRSSGKSEELVPE 3279
>Z92847-6|CAB07423.1| 1076|Caenorhabditis elegans Hypothetical
protein T12A7.5 protein.
Length = 1076
Score = 28.3 bits (60), Expect = 8.0
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = -1
Query: 252 DPVSDDNQKLRHGDIFRD*KFFFVQC 175
D + D++QKLRH I D +F V+C
Sbjct: 202 DEMVDEDQKLRHAKIDEDNEFVDVEC 227
>Z73911-9|CAA98143.1| 1076|Caenorhabditis elegans Hypothetical
protein T12A7.5 protein.
Length = 1076
Score = 28.3 bits (60), Expect = 8.0
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = -1
Query: 252 DPVSDDNQKLRHGDIFRD*KFFFVQC 175
D + D++QKLRH I D +F V+C
Sbjct: 202 DEMVDEDQKLRHAKIDEDNEFVDVEC 227
>AL132951-2|CAC44305.1| 561|Caenorhabditis elegans Hypothetical
protein Y67H2A.4a protein.
Length = 561
Score = 28.3 bits (60), Expect = 8.0
Identities = 14/39 (35%), Positives = 23/39 (58%)
Frame = +1
Query: 178 LDKKKFLVPEDITMSQFLVIIRNRIRVKPNQALYLIINN 294
LDK++F + + MSQ V R+R + PNQ+ + N+
Sbjct: 318 LDKEEFTKVQQLIMSQTTVGQRHRDHITPNQSFRVETNS 356
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,132,777
Number of Sequences: 27780
Number of extensions: 419159
Number of successful extensions: 1194
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1078
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1188
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2318293978
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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