Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP17_F_E15
         (909 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    23   2.9  
AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    23   2.9  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    23   3.8  

>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 23.4 bits (48), Expect = 2.9
 Identities = 12/56 (21%), Positives = 25/56 (44%)
 Frame = +1

Query: 325 AQAYENYGDEDGFLYITYASQEVFGYQDDMQEKSNREVEAIRHRFPNKVPLYVTRY 492
           A+A+ +  D    ++      + F Y     EK    +++  + + N VP+ V R+
Sbjct: 18  AKAHYSLRDFKANIFQVKYQWKYFDYNFGSDEKRQAAIQSGEYNYKNNVPIDVDRW 73


>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 23.4 bits (48), Expect = 2.9
 Identities = 9/35 (25%), Positives = 20/35 (57%)
 Frame = -2

Query: 569 RNCDIVSSCGTKNFVLPNTGTSRSLTYLVTYSGTL 465
           R C+++++  T+ + L N G   + TY+  Y  ++
Sbjct: 193 RPCNVLATSLTEPYTLRNYGRRINCTYVALYPSSV 227


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 23.0 bits (47), Expect = 3.8
 Identities = 9/33 (27%), Positives = 17/33 (51%)
 Frame = -2

Query: 695 RESGTAGTPAPSSYCGSPKLCRSQASTMPCESR 597
           + + ++ + AP+S C SP+    +   MP   R
Sbjct: 591 KPASSSASSAPTSVCSSPRSEDKEVEDMPVLKR 623


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 235,348
Number of Sequences: 438
Number of extensions: 5574
Number of successful extensions: 10
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29509116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)