Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP17_F_E13
(907 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0900 + 29232365-29232931 30 2.9
12_02_0082 - 13372997-13373863,13373928-13374386 29 3.8
06_01_0438 + 3110703-3111945,3112486-3113057 29 6.7
03_02_0916 + 12364557-12364906,12365485-12365592,12365731-12366343 29 6.7
10_08_0940 - 21708557-21708733,21709058-21709142,21709330-217095... 28 8.9
05_03_0681 + 16892502-16892575,16892719-16893097 28 8.9
03_01_0418 - 3211687-3211933,3212016-3212164,3212443-3212551,321... 28 8.9
01_01_0623 + 4672581-4673413,4674274-4674389,4674694-4674902,467... 28 8.9
>04_04_0900 + 29232365-29232931
Length = 188
Score = 29.9 bits (64), Expect = 2.9
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = -2
Query: 699 GERRTGIPVSGRVGTGERTRSFQGXR 622
G R +GIP SGR G+G +S G R
Sbjct: 117 GRRCSGIPASGRSGSGRLGKSMDGRR 142
>12_02_0082 - 13372997-13373863,13373928-13374386
Length = 441
Score = 29.5 bits (63), Expect = 3.8
Identities = 15/28 (53%), Positives = 16/28 (57%)
Frame = +3
Query: 621 GVXPGSSSCALLFRPCRLPGYLSAFLPS 704
GV +SSCALLF P L G LPS
Sbjct: 157 GVLARTSSCALLFSPMPLDGPTLGLLPS 184
>06_01_0438 + 3110703-3111945,3112486-3113057
Length = 604
Score = 28.7 bits (61), Expect = 6.7
Identities = 11/34 (32%), Positives = 21/34 (61%)
Frame = -2
Query: 156 HCILVVVCPNSSMYLIMSGSN*PSXKGRSAAAVP 55
HC + +VC +S+ L++S P+ ++AA+P
Sbjct: 64 HCFVEIVCADSAGRLLLSAKPRPAPAATTSAALP 97
>03_02_0916 + 12364557-12364906,12365485-12365592,12365731-12366343
Length = 356
Score = 28.7 bits (61), Expect = 6.7
Identities = 22/56 (39%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
Frame = +2
Query: 353 PLPRSLTRCARSF--GCGERYQLTQRR*YGYPQNQGITQ--ERTCEQKASKRPGTV 508
P PRS RC GCG R Q TQR P N IT E TC ++ P +
Sbjct: 150 PYPRSYYRCTHKLDQGCGARRQ-TQRC-EADPSNYDITYYGEHTCRDPSTIIPTAI 203
>10_08_0940 -
21708557-21708733,21709058-21709142,21709330-21709551,
21710640-21710815,21711883-21711946,21712433-21712507,
21715114-21715199,21715297-21716715
Length = 767
Score = 28.3 bits (60), Expect = 8.9
Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
Frame = +2
Query: 302 NESAN---ARGEAVCVLGALPLPRSLTRCAR 385
+ESAN AR EAV +G +P+ L RC+R
Sbjct: 434 DESANVDAARSEAVMRVGGIPMLLDLARCSR 464
>05_03_0681 + 16892502-16892575,16892719-16893097
Length = 150
Score = 28.3 bits (60), Expect = 8.9
Identities = 15/47 (31%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
Frame = -3
Query: 812 GXNGGVRGTPAPAWXERTYTEXXYLPA*GMR-KRHASRREKGGQVSR 675
G GG P+PAW +R A ++ RH +RR +G R
Sbjct: 95 GSGGGEAWRPSPAWIQRRPPSPHMAAAVDLKVVRHGTRRPRGSDGDR 141
>03_01_0418 -
3211687-3211933,3212016-3212164,3212443-3212551,
3212650-3212840,3212967-3213102,3213216-3213716,
3213819-3213923,3214008-3214095,3214195-3214266,
3214692-3214762,3215726-3216008,3216388-3216463
Length = 675
Score = 28.3 bits (60), Expect = 8.9
Identities = 30/109 (27%), Positives = 41/109 (37%), Gaps = 2/109 (1%)
Frame = +2
Query: 353 PLPRSLT-RCARSFGC-GERYQLTQRR*YGYPQNQGITQERTCEQKASKRPGTVKRPRCW 526
P P++ R FGC + +R Y + QG E + P TVK+ +
Sbjct: 109 PSPKTQEKRLGSLFGCMSVPLRNNERWQQHYQEEQGGDDEWRGSSFTRREPSTVKKSKTE 168
Query: 527 RFSIGSAPLTSITKIDAQVRGGETRQDYKDTRRXPWKLLVRSPVPTLPL 673
R S S + KID DYK W + RSP T+ L
Sbjct: 169 RSSRRSHERSRRGKIDLDAAEATVTLDYK-IFVATWNVGGRSPPNTMSL 216
>01_01_0623 + 4672581-4673413,4674274-4674389,4674694-4674902,
4675953-4676072,4676185-4676313,4676394-4676442,
4676899-4676970,4677574-4677707,4677798-4677915,
4678332-4678541,4678630-4678942,4679539-4679632,
4679854-4679962,4680243-4680514,4680597-4680724,
4680832-4681066,4681570-4681758,4681845-4682128,
4682218-4682398,4682486-4682728,4682904-4682986,
4683119-4683227,4687996-4688091,4688675-4688764,
4688881-4689129,4689233-4689412,4690179-4690250,
4691385-4691474,4691605-4691705,4691794-4691959
Length = 1757
Score = 28.3 bits (60), Expect = 8.9
Identities = 15/55 (27%), Positives = 21/55 (38%)
Frame = +2
Query: 473 CEQKASKRPGTVKRPRCWRFSIGSAPLTSITKIDAQVRGGETRQDYKDTRRXPWK 637
C Q S+ V CW + S L KI A + G+ + Y + WK
Sbjct: 1564 CVQTLSEHKAAVTSVLCWDEKLLSCSLDKTVKIWAASKSGDLQVIYTHSEEHGWK 1618
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,160,244
Number of Sequences: 37544
Number of extensions: 455355
Number of successful extensions: 1250
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1231
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1250
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2565528060
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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