Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP17_F_E12
(928 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 36 0.008
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 34 0.033
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 33 0.075
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 30 0.40
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 29 0.70
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr... 29 0.70
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 29 0.93
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 29 1.2
SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p... 26 6.6
SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces ... 26 8.7
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 26 8.7
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 35.9 bits (79), Expect = 0.008
Identities = 19/52 (36%), Positives = 19/52 (36%), Gaps = 1/52 (1%)
Frame = +1
Query: 628 SPEAPPPXXPXXTP-PXRXXAXKTPPXFXGXXPXGPPXTAPGXXPPGGXPPP 780
SP PPP TP P P G P PP G PP PPP
Sbjct: 731 SPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 33.9 bits (74), Expect = 0.033
Identities = 23/81 (28%), Positives = 23/81 (28%)
Frame = +1
Query: 538 PXXPGXXXXXPXAXXPPKAPKXPNXRXGRXSPEAPPPXXPXXTPPXRXXAXKTPPXFXGX 717
P P P AP P G P P PP A P G
Sbjct: 1150 PPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSE--APPVPKPSVGV 1207
Query: 718 XPXGPPXTAPGXXPPGGXPPP 780
P PP TAP P PP
Sbjct: 1208 PPVPPPSTAPPVPTPSAGLPP 1228
Score = 30.3 bits (65), Expect = 0.40
Identities = 20/81 (24%), Positives = 21/81 (25%)
Frame = +1
Query: 538 PXXPGXXXXXPXAXXPPKAPKXPNXRXGRXSPEAPPPXXPXXTPPXRXXAXKTPPXFXGX 717
P P P P AP P +P P P P A P G
Sbjct: 1121 PPVPKPSVAAPPVPVPSGAPPVPKPSVA--APPVPAPSGAPPVPKPSVAAPPVPAPSSGI 1178
Query: 718 XPXGPPXTAPGXXPPGGXPPP 780
P P PP PP
Sbjct: 1179 PPVPKPAAGVPPVPPPSEAPP 1199
Score = 27.5 bits (58), Expect = 2.8
Identities = 20/73 (27%), Positives = 22/73 (30%), Gaps = 3/73 (4%)
Frame = +1
Query: 568 PXAXXPPKAPKXPNXRXGRXSPEAPPPXXPXXTPPXRXXAXKTPPXFX--GXXPXGPPXT 741
P P P + S PP P PP + PP G P P
Sbjct: 1088 PSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPSV 1147
Query: 742 APGXXP-PGGXPP 777
A P P G PP
Sbjct: 1148 AAPPVPAPSGAPP 1160
Score = 25.8 bits (54), Expect = 8.7
Identities = 18/54 (33%), Positives = 18/54 (33%), Gaps = 7/54 (12%)
Frame = +1
Query: 637 APPPXXPXXTPPX---RXXAXKTPPXFXGXXPXGPPXTAPGXXP----PGGXPP 777
APP P TPP A PP P AP P P G PP
Sbjct: 1040 APPVPIPTSTPPVPKSSSGAPSAPPPVPAPSSEIPSIPAPSGAPPVPAPSGIPP 1093
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 32.7 bits (71), Expect = 0.075
Identities = 29/103 (28%), Positives = 34/103 (33%), Gaps = 1/103 (0%)
Frame = +1
Query: 457 PAXVXPXRPAVXXRXXXSSXXXGXXXVPXXPGXXXXXPXAXXPPKAPKXPNXRXGRXSPE 636
P P R A ++ VP P P + PP AP P+ G +P
Sbjct: 391 PPPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSL-PPSAP--PSLPMG--APA 445
Query: 637 APP-PXXPXXTPPXRXXAXKTPPXFXGXXPXGPPXTAPGXXPP 762
APP P PP PP P PP AP P
Sbjct: 446 APPLPPSAPIAPPLPAGMPAAPP-LPPAAPAPPPAPAPAPAAP 487
Score = 27.1 bits (57), Expect = 3.8
Identities = 17/53 (32%), Positives = 18/53 (33%), Gaps = 2/53 (3%)
Frame = +1
Query: 628 SPEAPP--PXXPXXTPPXRXXAXKTPPXFXGXXPXGPPXTAPGXXPPGGXPPP 780
S APP P P PP R + P P PP PP P P
Sbjct: 226 STSAPPIPPSIPSSRPPERVPSLSAP----APPPIPPPSNGTVSSPPNSPPRP 274
Score = 27.1 bits (57), Expect = 3.8
Identities = 20/67 (29%), Positives = 23/67 (34%), Gaps = 2/67 (2%)
Frame = +1
Query: 586 PKAPKXPNXRXGRXSPEAPPPXXPXXTPPXRXXAXKTPP--XFXGXXPXGPPXTAPGXXP 759
P P P+ +P + PP P P A PP P G P AP P
Sbjct: 415 PPVPTPPSLPPS--APPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMP-AAPPLPP 471
Query: 760 PGGXPPP 780
PPP
Sbjct: 472 AAPAPPP 478
Score = 26.6 bits (56), Expect = 5.0
Identities = 18/71 (25%), Positives = 21/71 (29%)
Frame = +1
Query: 568 PXAXXPPKAPKXPNXRXGRXSPEAPPPXXPXXTPPXRXXAXKTPPXFXGXXPXGPPXTAP 747
P PP G S + P P + PP P PP +AP
Sbjct: 311 PPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAP 370
Query: 748 GXXPPGGXPPP 780
G PPP
Sbjct: 371 S---TGRQPPP 378
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 30.3 bits (65), Expect = 0.40
Identities = 17/51 (33%), Positives = 19/51 (37%), Gaps = 1/51 (1%)
Frame = +1
Query: 631 PEAPPPXXPXXTPPXRXXAXKTPPXFXGXXPXGPPXTAP-GXXPPGGXPPP 780
P + PP P P + A PP P PP P PP PPP
Sbjct: 1686 PVSTPPVRPQSAAPPQMSAPTPPPPPMSVPP--PPSAPPMPAGPPSAPPPP 1734
Score = 29.1 bits (62), Expect = 0.93
Identities = 18/61 (29%), Positives = 19/61 (31%)
Frame = +1
Query: 592 APKXPNXRXGRXSPEAPPPXXPXXTPPXRXXAXKTPPXFXGXXPXGPPXTAPGXXPPGGX 771
AP P A PP TPP + PP P GPP P P
Sbjct: 1682 APAHPVSTPPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAP-PMPAGPPSAPPPPLPASSA 1740
Query: 772 P 774
P
Sbjct: 1741 P 1741
Score = 26.2 bits (55), Expect = 6.6
Identities = 12/39 (30%), Positives = 13/39 (33%)
Frame = +2
Query: 632 QRPRPPXRHXKXRPXXPXXXKPPXDSXGXXPGAPXXPPP 748
Q PP P P PP + G P PPP
Sbjct: 1695 QSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPP 1733
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 29.5 bits (63), Expect = 0.70
Identities = 15/30 (50%), Positives = 16/30 (53%)
Frame = -1
Query: 817 RGGKGGXGGXXXPAGXAPXGGXPRGRXXGG 728
RGG+GG GG G GG RGR GG
Sbjct: 450 RGGRGGFGGRGGFGGRGGFGGG-RGRGRGG 478
>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 305
Score = 29.5 bits (63), Expect = 0.70
Identities = 19/52 (36%), Positives = 20/52 (38%), Gaps = 1/52 (1%)
Frame = -1
Query: 847 GGXTGPXXSXRGGKGGXGGXXXPAGXAPXGGXPRGR-XXGGPXVXPPGIXGG 695
GG G GG+GG GG A GG GR GG G GG
Sbjct: 12 GGSRGGRGGFNGGRGGFGGGRGGARGGGRGGARGGRGGRGGARGGRGGSSGG 63
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 29.1 bits (62), Expect = 0.93
Identities = 18/43 (41%), Positives = 18/43 (41%), Gaps = 2/43 (4%)
Frame = -1
Query: 847 GGXTGPXXSXRGGKGGXGGXXXPAGXAP--XGGXPRGRXXGGP 725
GG G GG GG GG G P GG P G GGP
Sbjct: 231 GGFEGGPGGFGGGPGGFGGGLGGFGGGPGGFGGGPGGH--GGP 271
Score = 26.6 bits (56), Expect = 5.0
Identities = 13/33 (39%), Positives = 14/33 (42%)
Frame = -3
Query: 668 GVXHGXXGGGASGXXRPXRXFGXXGAFGGLXAH 570
G G GGG+ G FG G FGG H
Sbjct: 187 GGGFGGFGGGSGGPPPGPGGFGGFGGFGGEGHH 219
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 28.7 bits (61), Expect = 1.2
Identities = 19/68 (27%), Positives = 21/68 (30%), Gaps = 2/68 (2%)
Frame = +1
Query: 583 PPKAPKXPNXRXGRXSP-EAPP-PXXPXXTPPXRXXAXKTPPXFXGXXPXGPPXTAPGXX 756
PP AP P + P APP P P +P P P AP
Sbjct: 124 PPSAPAPPTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKS 183
Query: 757 PPGGXPPP 780
PP P
Sbjct: 184 PPSAPSLP 191
Score = 27.5 bits (58), Expect = 2.8
Identities = 17/75 (22%), Positives = 21/75 (28%)
Frame = +1
Query: 538 PXXPGXXXXXPXAXXPPKAPKXPNXRXGRXSPEAPPPXXPXXTPPXRXXAXKTPPXFXGX 717
P P P + P + P+ P PP PP + A P
Sbjct: 130 PPTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPS 189
Query: 718 XPXGPPXTAPGXXPP 762
P P P PP
Sbjct: 190 LPSAVPPMPPKVPPP 204
>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 194
Score = 26.2 bits (55), Expect = 6.6
Identities = 17/48 (35%), Positives = 18/48 (37%)
Frame = -1
Query: 835 GPXXSXRGGKGGXGGXXXPAGXAPXGGXPRGRXXGGPXVXPPGIXGGF 692
G RGG+GG G GG RG GG G GGF
Sbjct: 138 GGRGGFRGGRGGSRGGFGGNSRGGFGGGSRGGFGGGSR---GGSRGGF 182
>SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 644
Score = 25.8 bits (54), Expect = 8.7
Identities = 13/27 (48%), Positives = 14/27 (51%)
Frame = -2
Query: 774 GXPPXGAXPGGGXXGAPGXXPXESXGG 694
G P GA PGG GAPG P + G
Sbjct: 612 GGAPGGA-PGGMPGGAPGGAPGGADNG 637
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 25.8 bits (54), Expect = 8.7
Identities = 9/17 (52%), Positives = 9/17 (52%)
Frame = +1
Query: 730 PPXTAPGXXPPGGXPPP 780
PP PG PP PPP
Sbjct: 11 PPPPPPGFEPPSQPPPP 27
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,895,628
Number of Sequences: 5004
Number of extensions: 22237
Number of successful extensions: 130
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 469338710
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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