Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP17_F_E11
(848 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 37 0.021
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 37 0.021
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 37 0.021
Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical pr... 33 0.26
AC024847-11|AAO21416.1| 453|Caenorhabditis elegans Ground-like ... 33 0.26
AC024847-10|AAF60859.1| 393|Caenorhabditis elegans Ground-like ... 33 0.26
Z77655-1|CAB01137.1| 393|Caenorhabditis elegans Hypothetical pr... 32 0.59
AF003151-19|AAK18922.1| 988|Caenorhabditis elegans Hypothetical... 31 0.78
U88314-13|ABR92611.1| 1346|Caenorhabditis elegans Formin homolog... 31 1.0
AB084086-1|BAC67013.1| 1346|Caenorhabditis elegans Formactin pro... 31 1.0
AL110477-13|CAB54337.2| 789|Caenorhabditis elegans Hypothetical... 31 1.4
AF230279-1|AAG16654.1| 789|Caenorhabditis elegans SWI3-like pro... 31 1.4
Z49888-1|CAA90064.1| 3498|Caenorhabditis elegans Hypothetical pr... 30 1.8
AL034392-5|CAE17989.1| 134|Caenorhabditis elegans Hypothetical ... 30 1.8
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 30 1.8
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 30 1.8
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 30 1.8
AL132860-21|CAB60518.2| 759|Caenorhabditis elegans Hypothetical... 29 4.2
AF057032-1|AAC13567.1| 759|Caenorhabditis elegans DNA topoisome... 29 4.2
Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical pr... 29 5.5
Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical pr... 29 5.5
AL032654-7|CAA21719.1| 219|Caenorhabditis elegans Hypothetical ... 29 5.5
AF068713-14|AAK73895.1| 172|Caenorhabditis elegans Ground-like ... 29 5.5
Z78013-8|CAN99686.1| 373|Caenorhabditis elegans Hypothetical pr... 28 7.3
Z77662-5|CAB01192.2| 579|Caenorhabditis elegans Hypothetical pr... 28 7.3
AL110485-27|CAB60369.3| 515|Caenorhabditis elegans Hypothetical... 28 7.3
AF045646-2|AAK29827.1| 371|Caenorhabditis elegans Collagen prot... 28 7.3
AC025716-19|AAK39602.2| 549|Caenorhabditis elegans Hypothetical... 28 7.3
AF039052-9|AAF98625.1| 302|Caenorhabditis elegans Hypothetical ... 23 8.6
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 28 9.6
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 28 9.6
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 36.7 bits (81), Expect = 0.021
Identities = 15/34 (44%), Positives = 15/34 (44%)
Frame = -1
Query: 689 GGGPPXXXXXFFXXXGGGXPXPPPXKXXXPPPPP 588
GG PP GG P PPP PPPPP
Sbjct: 740 GGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPP 773
Score = 34.3 bits (75), Expect = 0.11
Identities = 15/35 (42%), Positives = 15/35 (42%)
Frame = -1
Query: 692 GGGGPPXXXXXFFXXXGGGXPXPPPXKXXXPPPPP 588
GG PP GG P PPP PPPPP
Sbjct: 740 GGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPP 774
Score = 31.1 bits (67), Expect = 1.0
Identities = 15/33 (45%), Positives = 15/33 (45%)
Frame = +3
Query: 594 GGXXPPLXGGGXGXPPPPXXKKXXXXXGGAPPP 692
GG PP G G PPPP GG PPP
Sbjct: 756 GGPPPPPPPPG-GCPPPPPPPPPGGFKGGPPPP 787
Score = 28.7 bits (61), Expect = 5.5
Identities = 15/38 (39%), Positives = 15/38 (39%), Gaps = 4/38 (10%)
Frame = -1
Query: 689 GGGPPXXXXXFFXXXGGGXPXPPPXKXXXP----PPPP 588
GG PP GG P PPP P PPPP
Sbjct: 724 GGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPP 761
Score = 28.3 bits (60), Expect = 7.3
Identities = 12/31 (38%), Positives = 13/31 (41%)
Frame = +1
Query: 346 PXXXGXXXGXPPPPPXGXXKKIPPVSXKXXP 438
P G G PPPPP G + PV P
Sbjct: 775 PPPGGFKGGPPPPPPPGMFAPMAPVIPDYLP 805
Score = 27.9 bits (59), Expect = 9.6
Identities = 15/38 (39%), Positives = 15/38 (39%), Gaps = 4/38 (10%)
Frame = +2
Query: 593 GGXXPXXXGGG----GXGAPPPXXKKXXXXXXGGPPPP 694
GG P GG G PPP GGPPPP
Sbjct: 724 GGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPP 761
Score = 27.9 bits (59), Expect = 9.6
Identities = 14/32 (43%), Positives = 15/32 (46%)
Frame = +3
Query: 597 GXXPPLXGGGXGXPPPPXXKKXXXXXGGAPPP 692
G PP+ GG PPPP GG PPP
Sbjct: 749 GGLPPISGGPPPPPPPP---------GGCPPP 771
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 36.7 bits (81), Expect = 0.021
Identities = 15/34 (44%), Positives = 15/34 (44%)
Frame = -1
Query: 689 GGGPPXXXXXFFXXXGGGXPXPPPXKXXXPPPPP 588
GG PP GG P PPP PPPPP
Sbjct: 740 GGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPP 773
Score = 34.3 bits (75), Expect = 0.11
Identities = 15/35 (42%), Positives = 15/35 (42%)
Frame = -1
Query: 692 GGGGPPXXXXXFFXXXGGGXPXPPPXKXXXPPPPP 588
GG PP GG P PPP PPPPP
Sbjct: 740 GGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPP 774
Score = 31.1 bits (67), Expect = 1.0
Identities = 15/33 (45%), Positives = 15/33 (45%)
Frame = +3
Query: 594 GGXXPPLXGGGXGXPPPPXXKKXXXXXGGAPPP 692
GG PP G G PPPP GG PPP
Sbjct: 756 GGPPPPPPPPG-GCPPPPPPPPPGGFKGGPPPP 787
Score = 28.7 bits (61), Expect = 5.5
Identities = 15/38 (39%), Positives = 15/38 (39%), Gaps = 4/38 (10%)
Frame = -1
Query: 689 GGGPPXXXXXFFXXXGGGXPXPPPXKXXXP----PPPP 588
GG PP GG P PPP P PPPP
Sbjct: 724 GGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPP 761
Score = 28.3 bits (60), Expect = 7.3
Identities = 12/31 (38%), Positives = 13/31 (41%)
Frame = +1
Query: 346 PXXXGXXXGXPPPPPXGXXKKIPPVSXKXXP 438
P G G PPPPP G + PV P
Sbjct: 775 PPPGGFKGGPPPPPPPGMFAPMAPVIPDYLP 805
Score = 27.9 bits (59), Expect = 9.6
Identities = 15/38 (39%), Positives = 15/38 (39%), Gaps = 4/38 (10%)
Frame = +2
Query: 593 GGXXPXXXGGG----GXGAPPPXXKKXXXXXXGGPPPP 694
GG P GG G PPP GGPPPP
Sbjct: 724 GGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPP 761
Score = 27.9 bits (59), Expect = 9.6
Identities = 14/32 (43%), Positives = 15/32 (46%)
Frame = +3
Query: 597 GXXPPLXGGGXGXPPPPXXKKXXXXXGGAPPP 692
G PP+ GG PPPP GG PPP
Sbjct: 749 GGLPPISGGPPPPPPPP---------GGCPPP 771
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 36.7 bits (81), Expect = 0.021
Identities = 15/34 (44%), Positives = 15/34 (44%)
Frame = -1
Query: 689 GGGPPXXXXXFFXXXGGGXPXPPPXKXXXPPPPP 588
GG PP GG P PPP PPPPP
Sbjct: 323 GGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPP 356
Score = 34.3 bits (75), Expect = 0.11
Identities = 15/35 (42%), Positives = 15/35 (42%)
Frame = -1
Query: 692 GGGGPPXXXXXFFXXXGGGXPXPPPXKXXXPPPPP 588
GG PP GG P PPP PPPPP
Sbjct: 323 GGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPP 357
Score = 31.1 bits (67), Expect = 1.0
Identities = 15/33 (45%), Positives = 15/33 (45%)
Frame = +3
Query: 594 GGXXPPLXGGGXGXPPPPXXKKXXXXXGGAPPP 692
GG PP G G PPPP GG PPP
Sbjct: 339 GGPPPPPPPPG-GCPPPPPPPPPGGFKGGPPPP 370
Score = 28.7 bits (61), Expect = 5.5
Identities = 15/38 (39%), Positives = 15/38 (39%), Gaps = 4/38 (10%)
Frame = -1
Query: 689 GGGPPXXXXXFFXXXGGGXPXPPPXKXXXP----PPPP 588
GG PP GG P PPP P PPPP
Sbjct: 307 GGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPP 344
Score = 28.3 bits (60), Expect = 7.3
Identities = 12/31 (38%), Positives = 13/31 (41%)
Frame = +1
Query: 346 PXXXGXXXGXPPPPPXGXXKKIPPVSXKXXP 438
P G G PPPPP G + PV P
Sbjct: 358 PPPGGFKGGPPPPPPPGMFAPMAPVIPDYLP 388
Score = 27.9 bits (59), Expect = 9.6
Identities = 15/38 (39%), Positives = 15/38 (39%), Gaps = 4/38 (10%)
Frame = +2
Query: 593 GGXXPXXXGGG----GXGAPPPXXKKXXXXXXGGPPPP 694
GG P GG G PPP GGPPPP
Sbjct: 307 GGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPP 344
Score = 27.9 bits (59), Expect = 9.6
Identities = 14/32 (43%), Positives = 15/32 (46%)
Frame = +3
Query: 597 GXXPPLXGGGXGXPPPPXXKKXXXXXGGAPPP 692
G PP+ GG PPPP GG PPP
Sbjct: 332 GGLPPISGGPPPPPPPP---------GGCPPP 354
>Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical
protein T24B8.4 protein.
Length = 866
Score = 33.1 bits (72), Expect = 0.26
Identities = 16/35 (45%), Positives = 16/35 (45%)
Frame = -1
Query: 692 GGGGPPXXXXXFFXXXGGGXPXPPPXKXXXPPPPP 588
G GG P F GG P PPP PPPPP
Sbjct: 79 GPGGIPPPPPMF----AGGIPPPPPMMGGIPPPPP 109
Score = 30.7 bits (66), Expect = 1.4
Identities = 11/18 (61%), Positives = 11/18 (61%)
Frame = -1
Query: 641 GGXPXPPPXKXXXPPPPP 588
GG P PPP PPPPP
Sbjct: 102 GGIPPPPPMFGAPPPPPP 119
>AC024847-11|AAO21416.1| 453|Caenorhabditis elegans Ground-like
(grd related) protein16, isoform b protein.
Length = 453
Score = 33.1 bits (72), Expect = 0.26
Identities = 14/35 (40%), Positives = 15/35 (42%)
Frame = -1
Query: 692 GGGGPPXXXXXFFXXXGGGXPXPPPXKXXXPPPPP 588
GGG PP + GGG P PPPPP
Sbjct: 36 GGGAPPCSSSSYATGGGGGSYAAAPALPPPPPPPP 70
>AC024847-10|AAF60859.1| 393|Caenorhabditis elegans Ground-like
(grd related) protein16, isoform a protein.
Length = 393
Score = 33.1 bits (72), Expect = 0.26
Identities = 14/35 (40%), Positives = 15/35 (42%)
Frame = -1
Query: 692 GGGGPPXXXXXFFXXXGGGXPXPPPXKXXXPPPPP 588
GGG PP + GGG P PPPPP
Sbjct: 36 GGGAPPCSSSSYATGGGGGSYAAAPALPPPPPPPP 70
>Z77655-1|CAB01137.1| 393|Caenorhabditis elegans Hypothetical
protein C56A3.1 protein.
Length = 393
Score = 31.9 bits (69), Expect = 0.59
Identities = 14/35 (40%), Positives = 15/35 (42%)
Frame = +1
Query: 589 GGGGGSXXFXGGGXGXPPPXXKKKXXXXXGGPPPP 693
GGGGG + GG G GGPPPP
Sbjct: 127 GGGGGGGGYASGGSGGFASAPVSLPAPSYGGPPPP 161
>AF003151-19|AAK18922.1| 988|Caenorhabditis elegans Hypothetical
protein D1007.7 protein.
Length = 988
Score = 31.5 bits (68), Expect = 0.78
Identities = 13/29 (44%), Positives = 14/29 (48%)
Frame = +3
Query: 606 PPLXGGGXGXPPPPXXKKXXXXXGGAPPP 692
PP GG PPPP + GG PPP
Sbjct: 772 PPPRGGMHHMPPPPSFRGGRGGHGGPPPP 800
Score = 27.9 bits (59), Expect = 9.6
Identities = 12/30 (40%), Positives = 13/30 (43%)
Frame = +2
Query: 605 PXXXGGGGXGAPPPXXKKXXXXXXGGPPPP 694
P GG PPP + GGPPPP
Sbjct: 771 PPPPRGGMHHMPPPPSFRGGRGGHGGPPPP 800
>U88314-13|ABR92611.1| 1346|Caenorhabditis elegans Formin homology
domain protein 1 protein.
Length = 1346
Score = 31.1 bits (67), Expect = 1.0
Identities = 11/18 (61%), Positives = 11/18 (61%)
Frame = -1
Query: 641 GGXPXPPPXKXXXPPPPP 588
GG P PPP PPPPP
Sbjct: 787 GGIPPPPPLGIIPPPPPP 804
>AB084086-1|BAC67013.1| 1346|Caenorhabditis elegans Formactin
protein.
Length = 1346
Score = 31.1 bits (67), Expect = 1.0
Identities = 11/18 (61%), Positives = 11/18 (61%)
Frame = -1
Query: 641 GGXPXPPPXKXXXPPPPP 588
GG P PPP PPPPP
Sbjct: 787 GGIPPPPPLGIIPPPPPP 804
>AL110477-13|CAB54337.2| 789|Caenorhabditis elegans Hypothetical
protein Y113G7B.23 protein.
Length = 789
Score = 30.7 bits (66), Expect = 1.4
Identities = 15/29 (51%), Positives = 17/29 (58%)
Frame = +3
Query: 606 PPLXGGGXGXPPPPXXKKXXXXXGGAPPP 692
PP GGG G PPPP ++ GG PPP
Sbjct: 673 PP--GGGQGPPPPPQGQQ---YYGGPPPP 696
Score = 29.9 bits (64), Expect = 2.4
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = +1
Query: 619 GGGXGXPPPXXKKKXXXXXGGPPPP 693
GGG G PPP ++ GGPPPP
Sbjct: 675 GGGQGPPPPPQGQQYY---GGPPPP 696
>AF230279-1|AAG16654.1| 789|Caenorhabditis elegans SWI3-like
protein protein.
Length = 789
Score = 30.7 bits (66), Expect = 1.4
Identities = 15/29 (51%), Positives = 17/29 (58%)
Frame = +3
Query: 606 PPLXGGGXGXPPPPXXKKXXXXXGGAPPP 692
PP GGG G PPPP ++ GG PPP
Sbjct: 673 PP--GGGQGPPPPPQGQQ---YYGGPPPP 696
Score = 29.9 bits (64), Expect = 2.4
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = +1
Query: 619 GGGXGXPPPXXKKKXXXXXGGPPPP 693
GGG G PPP ++ GGPPPP
Sbjct: 675 GGGQGPPPPPQGQQYY---GGPPPP 696
>Z49888-1|CAA90064.1| 3498|Caenorhabditis elegans Hypothetical protein
F47A4.2 protein.
Length = 3498
Score = 30.3 bits (65), Expect = 1.8
Identities = 14/31 (45%), Positives = 20/31 (64%)
Frame = -3
Query: 126 ERYAGIKATM**GSLEYDSFNTRSVLESNLK 34
E +AG+K + G+L YDS+N L SN+K
Sbjct: 1387 EDFAGVKLQLRGGTLRYDSYNDFKWLVSNMK 1417
>AL034392-5|CAE17989.1| 134|Caenorhabditis elegans Hypothetical
protein Y40B1A.5 protein.
Length = 134
Score = 30.3 bits (65), Expect = 1.8
Identities = 15/36 (41%), Positives = 15/36 (41%), Gaps = 3/36 (8%)
Frame = -1
Query: 686 GGPPXXXXXFFXXX---GGGXPXPPPXKXXXPPPPP 588
GGPP G G P PPP PPPPP
Sbjct: 75 GGPPPHHQYHLQYPPPHGLGPPPPPPHYYTQPPPPP 110
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 30.3 bits (65), Expect = 1.8
Identities = 15/41 (36%), Positives = 15/41 (36%)
Frame = -1
Query: 710 SPXXXXGGGGPPXXXXXFFXXXGGGXPXPPPXKXXXPPPPP 588
SP G PP GG P PP PPPPP
Sbjct: 263 SPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPP 303
Score = 29.5 bits (63), Expect = 3.2
Identities = 12/29 (41%), Positives = 12/29 (41%)
Frame = +3
Query: 606 PPLXGGGXGXPPPPXXKKXXXXXGGAPPP 692
PPL G G PPP G PPP
Sbjct: 247 PPLAGSGSPPPPPAAGSPPPPRTGSPPPP 275
Score = 28.3 bits (60), Expect = 7.3
Identities = 12/31 (38%), Positives = 12/31 (38%)
Frame = +1
Query: 601 GSXXFXGGGXGXPPPXXKKKXXXXXGGPPPP 693
GS G G PPP G PPPP
Sbjct: 245 GSPPLAGSGSPPPPPAAGSPPPPRTGSPPPP 275
Score = 27.9 bits (59), Expect = 9.6
Identities = 13/33 (39%), Positives = 14/33 (42%)
Frame = +3
Query: 594 GGXXPPLXGGGXGXPPPPXXKKXXXXXGGAPPP 692
G PP G PPPP GG+PPP
Sbjct: 262 GSPPPPRTGS---PPPPPTGSPPPPPAGGSPPP 291
Score = 27.9 bits (59), Expect = 9.6
Identities = 13/33 (39%), Positives = 14/33 (42%)
Frame = +3
Query: 594 GGXXPPLXGGGXGXPPPPXXKKXXXXXGGAPPP 692
GG PP G PPPP + G PPP
Sbjct: 286 GGSPPPPRAGS---PPPPPPPRGSPPTGSLPPP 315
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 30.3 bits (65), Expect = 1.8
Identities = 15/41 (36%), Positives = 15/41 (36%)
Frame = -1
Query: 710 SPXXXXGGGGPPXXXXXFFXXXGGGXPXPPPXKXXXPPPPP 588
SP G PP GG P PP PPPPP
Sbjct: 284 SPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPP 324
Score = 29.5 bits (63), Expect = 3.2
Identities = 12/29 (41%), Positives = 12/29 (41%)
Frame = +3
Query: 606 PPLXGGGXGXPPPPXXKKXXXXXGGAPPP 692
PPL G G PPP G PPP
Sbjct: 268 PPLAGSGSPPPPPAAGSPPPPRTGSPPPP 296
Score = 28.3 bits (60), Expect = 7.3
Identities = 12/31 (38%), Positives = 12/31 (38%)
Frame = +1
Query: 601 GSXXFXGGGXGXPPPXXKKKXXXXXGGPPPP 693
GS G G PPP G PPPP
Sbjct: 266 GSPPLAGSGSPPPPPAAGSPPPPRTGSPPPP 296
Score = 27.9 bits (59), Expect = 9.6
Identities = 13/33 (39%), Positives = 14/33 (42%)
Frame = +3
Query: 594 GGXXPPLXGGGXGXPPPPXXKKXXXXXGGAPPP 692
G PP G PPPP GG+PPP
Sbjct: 283 GSPPPPRTGS---PPPPPTGSPPPPPAGGSPPP 312
Score = 27.9 bits (59), Expect = 9.6
Identities = 13/33 (39%), Positives = 14/33 (42%)
Frame = +3
Query: 594 GGXXPPLXGGGXGXPPPPXXKKXXXXXGGAPPP 692
GG PP G PPPP + G PPP
Sbjct: 307 GGSPPPPRAGS---PPPPPPPRGSPPTGSLPPP 336
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 30.3 bits (65), Expect = 1.8
Identities = 15/41 (36%), Positives = 15/41 (36%)
Frame = -1
Query: 710 SPXXXXGGGGPPXXXXXFFXXXGGGXPXPPPXKXXXPPPPP 588
SP G PP GG P PP PPPPP
Sbjct: 269 SPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPP 309
Score = 29.5 bits (63), Expect = 3.2
Identities = 12/29 (41%), Positives = 12/29 (41%)
Frame = +3
Query: 606 PPLXGGGXGXPPPPXXKKXXXXXGGAPPP 692
PPL G G PPP G PPP
Sbjct: 253 PPLAGSGSPPPPPAAGSPPPPRTGSPPPP 281
Score = 28.3 bits (60), Expect = 7.3
Identities = 12/31 (38%), Positives = 12/31 (38%)
Frame = +1
Query: 601 GSXXFXGGGXGXPPPXXKKKXXXXXGGPPPP 693
GS G G PPP G PPPP
Sbjct: 251 GSPPLAGSGSPPPPPAAGSPPPPRTGSPPPP 281
Score = 27.9 bits (59), Expect = 9.6
Identities = 13/33 (39%), Positives = 14/33 (42%)
Frame = +3
Query: 594 GGXXPPLXGGGXGXPPPPXXKKXXXXXGGAPPP 692
G PP G PPPP GG+PPP
Sbjct: 268 GSPPPPRTGS---PPPPPTGSPPPPPAGGSPPP 297
Score = 27.9 bits (59), Expect = 9.6
Identities = 13/33 (39%), Positives = 14/33 (42%)
Frame = +3
Query: 594 GGXXPPLXGGGXGXPPPPXXKKXXXXXGGAPPP 692
GG PP G PPPP + G PPP
Sbjct: 292 GGSPPPPRAGS---PPPPPPPRGSPPTGSLPPP 321
>AL132860-21|CAB60518.2| 759|Caenorhabditis elegans Hypothetical
protein Y56A3A.27 protein.
Length = 759
Score = 29.1 bits (62), Expect = 4.2
Identities = 17/40 (42%), Positives = 17/40 (42%)
Frame = -1
Query: 707 PXXXXGGGGPPXXXXXFFXXXGGGXPXPPPXKXXXPPPPP 588
P GGGGPP GGG P PP PP PP
Sbjct: 618 PGGPGGGGGPPRGPGG----GGGGGPTGPP----APPKPP 649
>AF057032-1|AAC13567.1| 759|Caenorhabditis elegans DNA
topoisomerase III protein.
Length = 759
Score = 29.1 bits (62), Expect = 4.2
Identities = 17/40 (42%), Positives = 17/40 (42%)
Frame = -1
Query: 707 PXXXXGGGGPPXXXXXFFXXXGGGXPXPPPXKXXXPPPPP 588
P GGGGPP GGG P PP PP PP
Sbjct: 618 PGGPGGGGGPPRGPGG----GGGGGPTGPP----APPKPP 649
>Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical
protein ZK643.8 protein.
Length = 774
Score = 28.7 bits (61), Expect = 5.5
Identities = 13/35 (37%), Positives = 14/35 (40%)
Frame = -1
Query: 692 GGGGPPXXXXXFFXXXGGGXPXPPPXKXXXPPPPP 588
GGGG + GGG P PPPPP
Sbjct: 275 GGGGGGGSSGGYAGSSGGGGYSAPAAAPPPPPPPP 309
>Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical
protein ZK643.8 protein.
Length = 774
Score = 28.7 bits (61), Expect = 5.5
Identities = 13/35 (37%), Positives = 14/35 (40%)
Frame = -1
Query: 692 GGGGPPXXXXXFFXXXGGGXPXPPPXKXXXPPPPP 588
GGGG + GGG P PPPPP
Sbjct: 275 GGGGGGGSSGGYAGSSGGGGYSAPAAAPPPPPPPP 309
>AL032654-7|CAA21719.1| 219|Caenorhabditis elegans Hypothetical
protein Y52B11A.5 protein.
Length = 219
Score = 28.7 bits (61), Expect = 5.5
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = -1
Query: 644 GGGXPXPPPXKXXXPPPP 591
GGG PPP + PPPP
Sbjct: 23 GGGKGRPPPARPPPPPPP 40
>AF068713-14|AAK73895.1| 172|Caenorhabditis elegans Ground-like
(grd related) protein29 protein.
Length = 172
Score = 28.7 bits (61), Expect = 5.5
Identities = 18/49 (36%), Positives = 19/49 (38%)
Frame = +1
Query: 589 GGGGGSXXFXGGGXGXPPPXXKKKXXXXXGGPPPPXXWXGEKXXXFXKK 735
GGGGG G G G PPP PPPP G K +K
Sbjct: 50 GGGGGCGYGGGYGCGIPPPP-----------PPPPQCGCGRKKRSLPEK 87
>Z78013-8|CAN99686.1| 373|Caenorhabditis elegans Hypothetical
protein F15B9.10 protein.
Length = 373
Score = 28.3 bits (60), Expect = 7.3
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = -2
Query: 646 GGGGXPXPPPXXGG 605
GGGG P PPP GG
Sbjct: 267 GGGGYPQPPPQQGG 280
>Z77662-5|CAB01192.2| 579|Caenorhabditis elegans Hypothetical
protein F47B8.5 protein.
Length = 579
Score = 28.3 bits (60), Expect = 7.3
Identities = 13/35 (37%), Positives = 13/35 (37%)
Frame = +1
Query: 589 GGGGGSXXFXGGGXGXPPPXXKKKXXXXXGGPPPP 693
GGGGG GGG G P PP P
Sbjct: 389 GGGGGGYSGGGGGGGEAAPPSSPPADAAPAPPPAP 423
>AL110485-27|CAB60369.3| 515|Caenorhabditis elegans Hypothetical
protein Y46G5A.26a protein.
Length = 515
Score = 28.3 bits (60), Expect = 7.3
Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = +2
Query: 38 RFDSKTDLVLKESYSKLPYHIVAFIP-AYRSKRTK 139
+F +KT++ L ESYS +H F+P A SK +
Sbjct: 140 KFKNKTEISLHESYSNYLWHPDTFVPNAISSKNPR 174
>AF045646-2|AAK29827.1| 371|Caenorhabditis elegans Collagen protein
103 protein.
Length = 371
Score = 28.3 bits (60), Expect = 7.3
Identities = 17/52 (32%), Positives = 18/52 (34%)
Frame = -2
Query: 415 GGFFXXXPXGGGGGXXGRNXXXLGNKXXPAPXNXPXKXWXXXGLVSXPXXPG 260
GG GGGGG G N P P P + GL P PG
Sbjct: 114 GGAVGGGYGGGGGGGGGCQCSPSSNTCPPGPRGPPGQA-GLDGLPGAPGQPG 164
>AC025716-19|AAK39602.2| 549|Caenorhabditis elegans Hypothetical
protein Y39G10AR.17 protein.
Length = 549
Score = 28.3 bits (60), Expect = 7.3
Identities = 10/17 (58%), Positives = 10/17 (58%)
Frame = -1
Query: 638 GXPXPPPXKXXXPPPPP 588
G P P P K PPPPP
Sbjct: 15 GIPCPSPTKQVLPPPPP 31
>AF039052-9|AAF98625.1| 302|Caenorhabditis elegans Hypothetical
protein T22D1.2 protein.
Length = 302
Score = 23.4 bits (48), Expect(2) = 8.6
Identities = 8/14 (57%), Positives = 8/14 (57%)
Frame = +1
Query: 376 PPPPPXGXXKKIPP 417
PPPPP G PP
Sbjct: 158 PPPPPKGTGSPPPP 171
Score = 23.0 bits (47), Expect(2) = 8.6
Identities = 16/53 (30%), Positives = 18/53 (33%), Gaps = 1/53 (1%)
Frame = +1
Query: 241 RAPVXPXRGXAGXKPTXXXPXAXXGNXXGPGXXCF-PXXXGXXXGXPPPPPXG 396
R P P +G P P + G G P G PPPPP G
Sbjct: 94 RRPPPPPKGTGTPPPP---PTGEPQDLSGEGNASRRPPPPPKGTGSPPPPPTG 143
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 27.9 bits (59), Expect = 9.6
Identities = 16/37 (43%), Positives = 16/37 (43%), Gaps = 4/37 (10%)
Frame = -1
Query: 686 GGPPXXXXXFFXXXG-GGXPXPPPXKXXXP---PPPP 588
G PP F G GG P PPP P PPPP
Sbjct: 315 GMPPPPPPSRFGPPGMGGMPPPPPPGMRYPGGMPPPP 351
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 27.9 bits (59), Expect = 9.6
Identities = 16/37 (43%), Positives = 16/37 (43%), Gaps = 4/37 (10%)
Frame = -1
Query: 686 GGPPXXXXXFFXXXG-GGXPXPPPXKXXXP---PPPP 588
G PP F G GG P PPP P PPPP
Sbjct: 325 GMPPPPPPSRFGPPGMGGMPPPPPPGMRYPGGMPPPP 361
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,725,354
Number of Sequences: 27780
Number of extensions: 321367
Number of successful extensions: 2883
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 734
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2183
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2108493618
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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