Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP17_F_E10
         (869 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC20G8.01 |cdc17||ATP-dependent DNA ligase Cdc17|Schizosacchar...    31   0.28 
SPBC4F6.10 |vps901|vps9a|guanyl-nucleotide exchange factor Vps90...    29   0.65 
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch...    29   1.1  
SPAC17C9.14 |||Pex19 protein family|Schizosaccharomyces pombe|ch...    27   2.6  
SPCC4B3.07 |||nuclear pore associated protein|Schizosaccharomyce...    27   3.5  
SPAC8E11.05c |||conserved fungal protein|Schizosaccharomyces pom...    27   4.6  
SPAC31A2.09c |apm4||AP-2 adaptor complex subunit Apm4 |Schizosac...    26   6.1  
SPBC146.05c |cwf25||complexed with Cdc5 protein Cwf25 |Schizosac...    26   6.1  
SPAC20H4.10 |ufd2||ubiquitin-protein ligase E4 |Schizosaccharomy...    26   6.1  
SPBC3B8.09 |||U3 snoRNP-associated protein Utp3 |Schizosaccharom...    26   6.1  
SPBC19G7.06 |mbx1||MADS-box transcription factor Mbx1|Schizosacc...    26   8.0  
SPAC23C4.02 |crn1||actin binding protein, coronin Crn1|Schizosac...    26   8.0  

>SPAC20G8.01 |cdc17||ATP-dependent DNA ligase
           Cdc17|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 768

 Score = 30.7 bits (66), Expect = 0.28
 Identities = 24/109 (22%), Positives = 47/109 (43%)
 Frame = +3

Query: 273 DLGDLIIERRNHKVPHDLRNVENPSQRPEHRDPQDYSALNERKSQDKHTENLIPNLTNSH 452
           D+ +  I   +HK  H    VE      + ++    S   +RK +    + +  +  N+H
Sbjct: 26  DISNFFISSASHKSEH----VEVSQSSSDSKNVDGRSTSEKRKVES--VKLVDESKHNNH 79

Query: 453 KSYGYTGIDKDESIVSQDKVAFTNDNGNLYQSKESHSENSGTSTQDTVP 599
              G   ++++ +IVS+ K   T  + +      S + +SG ST   +P
Sbjct: 80  DDTGTQNVERENNIVSEAKKQKTLGSSSSSSDAVSSNNDSGASTPIPLP 128


>SPBC4F6.10 |vps901|vps9a|guanyl-nucleotide exchange factor Vps901
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 537

 Score = 29.5 bits (63), Expect = 0.65
 Identities = 24/70 (34%), Positives = 35/70 (50%), Gaps = 12/70 (17%)
 Frame = +3

Query: 273 DLGDLIIERRN----HKVPHD------LRNVENPSQRPEHRD-PQDYSALNERKSQDKHT 419
           DL D + E+RN    H   HD      +RN+E+ + + E  D   D   +NE++S DK  
Sbjct: 33  DLNDSLDEQRNAYNEHCKNHDQQPSQQVRNMEDEANQYEQTDSSSDQEVMNEKQSLDKEN 92

Query: 420 EN-LIPNLTN 446
            N  IP+  N
Sbjct: 93  RNDNIPHENN 102


>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
           Y|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1002

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 14/61 (22%), Positives = 31/61 (50%), Gaps = 7/61 (11%)
 Frame = +3

Query: 294 ERRNHKVPHDLRNVENPSQRPEHRDPQD---YSALNERK----SQDKHTENLIPNLTNSH 452
           ++ +HK P D  + + P  +  H+ P+D   +    +++     ++KH E    N+ +SH
Sbjct: 379 DKEHHKGPKDKEHHKGPKDKEHHKGPKDKEHHKGPKDKEHHQGPKEKHNERPEQNMQSSH 438

Query: 453 K 455
           +
Sbjct: 439 E 439



 Score = 27.9 bits (59), Expect = 2.0
 Identities = 10/41 (24%), Positives = 20/41 (48%)
 Frame = +3

Query: 294 ERRNHKVPHDLRNVENPSQRPEHRDPQDYSALNERKSQDKH 416
           ++ +HK P D  + + P  +  H+ P+D       K ++ H
Sbjct: 361 DKEHHKGPKDKEHHKGPKDKEHHKGPKDKEHHKGPKDKEHH 401



 Score = 27.9 bits (59), Expect = 2.0
 Identities = 10/41 (24%), Positives = 20/41 (48%)
 Frame = +3

Query: 294 ERRNHKVPHDLRNVENPSQRPEHRDPQDYSALNERKSQDKH 416
           ++ +HK P D  + + P  +  H+ P+D       K ++ H
Sbjct: 370 DKEHHKGPKDKEHHKGPKDKEHHKGPKDKEHHKGPKDKEHH 410


>SPAC17C9.14 |||Pex19 protein family|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 232

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 1/73 (1%)
 Frame = +3

Query: 264 NIPDLGDLIIERRNHKVPHDLRNVENPSQRPEHRDPQDYSALNERKSQDKHTENLIPNLT 443
           N  DL DL     +  VP   +N E      EH+   + S  NER   D +  +LI  + 
Sbjct: 23  NFDDLDDLDDILDDLDVPSAFKN-EEKKNIDEHKQTGNTSKENERIKNDDNLNSLIQEMM 81

Query: 444 NSHKSY-GYTGID 479
           +  +   G +G+D
Sbjct: 82  SKFEDLGGPSGLD 94


>SPCC4B3.07 |||nuclear pore associated protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 393

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 13/52 (25%), Positives = 24/52 (46%)
 Frame = +3

Query: 474 IDKDESIVSQDKVAFTNDNGNLYQSKESHSENSGTSTQDTVPKIIYVQTDGL 629
           + K + +  Q + A    +GN   SKE+ SEN      +    ++Y + D +
Sbjct: 15  LKKQQQLEKQKQEASYELSGNSSPSKENGSENVDNGEMEDETMLVYTEEDNI 66


>SPAC8E11.05c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 338

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = -3

Query: 264 CSFHQENLHHNNHSRFRSHITVFEDSL 184
           CS +++ L H +H   + HI + E +L
Sbjct: 257 CSINKDALTHRSHESLQQHIELLESTL 283


>SPAC31A2.09c |apm4||AP-2 adaptor complex subunit Apm4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 446

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 19/92 (20%), Positives = 35/92 (38%), Gaps = 2/92 (2%)
 Frame = +3

Query: 378 YSALNERKSQDKHTENLIPNLTNSHKSYGYTGIDKDESIVSQDKVAFTNDNGNLYQSKES 557
           +  LNE   +D    + I  L +    YG     + +++     +      GN    K S
Sbjct: 92  FGKLNENTVKDN--VSFIFELLDEMIDYGIIQTTEPDALARSVSITAVKKKGNALSLKRS 149

Query: 558 HSENSGTSTQDTVPKIIYVQTDGL--QDNQLY 647
           HS     +T   +P  +  +  G+  + N +Y
Sbjct: 150 HSSQLAHTTSSEIPGSVPWRRAGIKYRKNSIY 181


>SPBC146.05c |cwf25||complexed with Cdc5 protein Cwf25
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 376

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 13/57 (22%), Positives = 29/57 (50%)
 Frame = +3

Query: 288 IIERRNHKVPHDLRNVENPSQRPEHRDPQDYSALNERKSQDKHTENLIPNLTNSHKS 458
           ++E+R + +  D ++ E   +   HR  QD S   ER   ++H+ +   +   S+++
Sbjct: 153 LMEKRKYSLDSDRKSKERRHRDRHHRSNQDRS--RERSDNEQHSSDKREHSRRSYRN 207


>SPAC20H4.10 |ufd2||ubiquitin-protein ligase E4 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1010

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
 Frame = +1

Query: 361 IATLKITRLLMNESLRISILKI*YLT*QIVINPMVTLV*I-RTSLLLVKTKWRLQMIMGI 537
           ++ L     + N  LR  + +I Y   Q  +     L+ + RTS   V T+W L  +M  
Sbjct: 618 VSFLTQANYIKNPYLRAKLAEILYFGVQTHVGRSELLLDVVRTSK--VATRWLLPALMAF 675

Query: 538 YIKVKNLIPKTQ 573
           YI++++    TQ
Sbjct: 676 YIEIESTGQSTQ 687


>SPBC3B8.09 |||U3 snoRNP-associated protein Utp3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 597

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 20/88 (22%), Positives = 38/88 (43%)
 Frame = +3

Query: 444 NSHKSYGYTGIDKDESIVSQDKVAFTNDNGNLYQSKESHSENSGTSTQDTVPKIIYVQTD 623
           N+  +Y      +DE   +QDK+ F  DNG      E  S+    + + +  +      +
Sbjct: 29  NAINTYEDVANSEDEFYNAQDKILFDADNGEQADELEL-SDEELVALESSSDEEDGNAEE 87

Query: 624 GLQDNQLYQVAGSSGDSIIMSRAQTNKG 707
            L +N+  +++G   D++       NKG
Sbjct: 88  NLSENE--ELSGKKKDAVNEEELYDNKG 113


>SPBC19G7.06 |mbx1||MADS-box transcription factor
           Mbx1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 436

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +3

Query: 417 TENLIPNLTNSHKSYGYTGIDKDESIVSQDKVAFTNDNG 533
           T+N IP LT   ++YG +    D S V + +      NG
Sbjct: 211 TDNFIPFLTPKRQAYGQSSSRADRSSVRRSQSFKNRRNG 249


>SPAC23C4.02 |crn1||actin binding protein, coronin
           Crn1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 25/131 (19%), Positives = 50/131 (38%), Gaps = 1/131 (0%)
 Frame = +3

Query: 315 PHDLRNVENPSQRPEHRDPQDYSALNERKSQDKHTENLIPNLTNSHKSYGYTGIDKDESI 494
           P +    + PS+ PE +     ++  E  S+ +  +N     T +      T ++K    
Sbjct: 438 PKESAEEQKPSKEPEVKPTTPSASKVEEPSKKRDEDNHQKEETVTQPKREKTPVEKSFPK 497

Query: 495 VSQDKVAFTNDNGNLYQSKESHSENSGTSTQDTVPKII-YVQTDGLQDNQLYQVAGSSGD 671
            +   V F+ D       K+  SE       D  PK     ++  +++ + + V+    D
Sbjct: 498 PASSPVTFSED------VKKEPSEEKKLEVSDEAPKAAPLAESKKVEEKEPFYVSKDKKD 551

Query: 672 SIIMSRAQTNK 704
              ++ A  NK
Sbjct: 552 ISAVNLADLNK 562


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,377,207
Number of Sequences: 5004
Number of extensions: 70583
Number of successful extensions: 229
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 213
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 226
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 434475230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)