Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP17_F_E05
         (890 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0043 - 412675-412798,412891-412997,413104-413197,413733-41...    52   6e-07
09_04_0618 + 18988614-18989102,18989913-18990314,18990555-189908...    29   6.6  
05_07_0190 - 28279328-28280149                                         29   6.6  
01_06_0541 - 30088910-30089107,30089421-30089477,30089563-300897...    28   8.7  

>06_01_0043 -
           412675-412798,412891-412997,413104-413197,413733-413820,
           413902-413943,414117-414223,414812-414942
          Length = 230

 Score = 52.0 bits (119), Expect = 6e-07
 Identities = 25/44 (56%), Positives = 31/44 (70%)
 Frame = +3

Query: 297 MTTAARPTFDPARGGQGRGEKDLSAISRQYSSRDLPGHTKLKYR 428
           MTTAARPT+ PA+GG  +G   +   S++YSSRDL  HT LK R
Sbjct: 1   MTTAARPTWAPAKGGNEQGGTRIFGPSQKYSSRDLAAHTTLKPR 44



 Score = 41.1 bits (92), Expect = 0.001
 Identities = 43/160 (26%), Positives = 63/160 (39%), Gaps = 17/160 (10%)
 Frame = +1

Query: 436 GQGTSEELRSRDFRKELDDREKDVKTTTTKRTSEPQAKRTKV------------DQVPAA 579
           GQ T EEL+ R+ R EL++RE+   ++  K  +E + +R               D++   
Sbjct: 47  GQHTQEELQKRNLRDELEERERKHYSSKDKSYAEERDRRKSTSLLLEGSRREAEDKIVPR 106

Query: 580 SLDADDP-----LEGXXXXXXXXXXXXAALLAELNRXXXXXXXXXXXXXXXXXXXXXXXX 744
            +DADD       +              AL+AEL R                        
Sbjct: 107 EIDADDSDVEPRSDDESDEDDDDDDDTEALMAELERIKKERAEENLRKERQQAEEEAKMK 166

Query: 745 MENILSGNPLLNYSAAGQKNDMKVKRXWG**PLFSKNXAR 864
              ++ GNPL+N + AG  N   VKR W    +F KN AR
Sbjct: 167 EAELMRGNPLININNAGSFN---VKRRWDDDVVF-KNQAR 202


>09_04_0618 +
           18988614-18989102,18989913-18990314,18990555-18990806,
           18991564-18991941,18992350-18992426,18992700-18992808,
           18993424-18993574,18993810-18993903,18997072-18997474,
           18997590-18997742,18998115-18998474
          Length = 955

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 16/59 (27%), Positives = 21/59 (35%)
 Frame = +2

Query: 398 SSWSYET*IQGNQVKGHLRNYALVIFVRSWMIEKKMLKLRLQNVQVNHKQKELRLIKFL 574
           S WSYE       + GH     L      W+    +  L  Q   V+H       +KFL
Sbjct: 623 SVWSYEGFFSRKLISGHWSQMQLFFCAIWWLTNLALRNLAFQESDVSHILNTCHNLKFL 681


>05_07_0190 - 28279328-28280149
          Length = 273

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 17/44 (38%), Positives = 20/44 (45%)
 Frame = +1

Query: 475 RKELDDREKDVKTTTTKRTSEPQAKRTKVDQVPAASLDADDPLE 606
           R    +R     TTTT  TS        V  + AAS+D D PLE
Sbjct: 214 RPVASERAASETTTTTTTTSSSYGSPDGVLSMSAASVDGDCPLE 257


>01_06_0541 -
           30088910-30089107,30089421-30089477,30089563-30089721,
           30090639-30090777,30090863-30091247,30091612-30091816
          Length = 380

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 19/52 (36%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
 Frame = +3

Query: 276 KSAPAFIMTTAARPTFDPARGGQGRGEKDLSAISRQY-SSRDLPGHTKLKYR 428
           K AP       AR    P+RGG GRGE+      R Y  +RD  G     Y+
Sbjct: 61  KPAPPTQAAREARGGGAPSRGGFGRGERGRGRGGRGYGQNRDFGGDNANGYQ 112


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,601,268
Number of Sequences: 37544
Number of extensions: 275695
Number of successful extensions: 619
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 612
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 619
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2506954360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)