Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP17_F_E05
         (890 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z93388-3|CAB07655.1|  230|Caenorhabditis elegans Hypothetical pr...    74   2e-13
Z81476-3|CAB03922.3|  592|Caenorhabditis elegans Hypothetical pr...    33   0.21 
Z92808-1|CAB07266.2|  606|Caenorhabditis elegans Hypothetical pr...    30   1.9  
U97407-3|AAM15558.1| 1069|Caenorhabditis elegans Nompa homolog (...    29   3.4  
U97407-2|AAB52479.2| 1065|Caenorhabditis elegans Nompa homolog (...    29   3.4  
AL032623-14|CAA21518.1|  593|Caenorhabditis elegans Hypothetical...    29   3.4  
AF016674-6|AAB66129.1|  530|Caenorhabditis elegans Hypothetical ...    29   5.9  
Z93380-5|CAB07601.1|  240|Caenorhabditis elegans Hypothetical pr...    28   7.8  
Z81546-1|CAB04449.2|  859|Caenorhabditis elegans Hypothetical pr...    28   7.8  

>Z93388-3|CAB07655.1|  230|Caenorhabditis elegans Hypothetical
           protein T10C6.5 protein.
          Length = 230

 Score = 73.7 bits (173), Expect = 2e-13
 Identities = 32/44 (72%), Positives = 36/44 (81%)
 Frame = +3

Query: 297 MTTAARPTFDPARGGQGRGEKDLSAISRQYSSRDLPGHTKLKYR 428
           MTTA RPTF PARGG  RGE DLS +S QYSS+D+P HTK+KYR
Sbjct: 1   MTTAHRPTFHPARGGTARGEGDLSKLSNQYSSKDMPSHTKMKYR 44



 Score = 67.3 bits (157), Expect = 1e-11
 Identities = 50/156 (32%), Positives = 75/156 (48%), Gaps = 12/156 (7%)
 Frame = +1

Query: 433 SGQGTSEELRSRDFRKELDDREKDV----KTTTTKRTSEPQAKRTKVDQV---PAASLDA 591
           +GQ T  +LR +D R+EL+D+E++     +   +  +S   +KR ++DQ+    AAS+DA
Sbjct: 46  TGQETEADLRKKDLRRELEDKERNAIREKRARDSASSSSSHSKRQRMDQIAAESAASVDA 105

Query: 592 DDPLE--GXXXXXXXXXXXXAALLAELNRXXXXXXXXXXXXXXXXXXXXXXXXMENILSG 765
           D+ ++               AAL+AEL +                        MENIL+G
Sbjct: 106 DEAVDELNSSDDDDSDEDDTAALMAELEKIKKERAEEKAARDEEIKEKEEKQRMENILAG 165

Query: 766 NPLLNYSAAGQK---NDMKVKRXWG**PLFSKNXAR 864
           NPLLN + AG      D  VKR W    +F KN A+
Sbjct: 166 NPLLNDTPAGSSTSGGDFTVKRRWDDDVVF-KNCAK 200


>Z81476-3|CAB03922.3|  592|Caenorhabditis elegans Hypothetical
           protein C25F9.4 protein.
          Length = 592

 Score = 33.5 bits (73), Expect = 0.21
 Identities = 14/31 (45%), Positives = 21/31 (67%)
 Frame = +1

Query: 448 SEELRSRDFRKELDDREKDVKTTTTKRTSEP 540
           S E +SR+ +  LDDR+KD K+   +R +EP
Sbjct: 213 SAEPKSRNLKTPLDDRQKDFKSNLAQRENEP 243


>Z92808-1|CAB07266.2|  606|Caenorhabditis elegans Hypothetical
           protein M04C3.2 protein.
          Length = 606

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +1

Query: 448 SEELRSRDFRKELDDREKDVKTTTTKRTSEP 540
           S E +SR+ +  LD R+KD K+   +R  EP
Sbjct: 214 SAEPKSRNLKTPLDGRQKDFKSNLAQREKEP 244


>U97407-3|AAM15558.1| 1069|Caenorhabditis elegans Nompa homolog
           (drosophila nompa:no mechanoreceptor potential a)
           protein 1, isoform b protein.
          Length = 1069

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 14/67 (20%), Positives = 31/67 (46%)
 Frame = +1

Query: 406 VIRNLNTGXSGQGTSEELRSRDFRKELDDREKDVKTTTTKRTSEPQAKRTKVDQVPAASL 585
           V + ++TG S      E + R     ++ ++   +   TK+  +P  K T+  + P +++
Sbjct: 581 VTKEIDTGASAAANVPETKHRVSGTVVEGKDSKSQLLATKKVKKPTIKNTEHRRAPESTV 640

Query: 586 DADDPLE 606
               P+E
Sbjct: 641 PIGPPVE 647


>U97407-2|AAB52479.2| 1065|Caenorhabditis elegans Nompa homolog
           (drosophila nompa:no mechanoreceptor potential a)
           protein 1, isoform a protein.
          Length = 1065

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 14/67 (20%), Positives = 31/67 (46%)
 Frame = +1

Query: 406 VIRNLNTGXSGQGTSEELRSRDFRKELDDREKDVKTTTTKRTSEPQAKRTKVDQVPAASL 585
           V + ++TG S      E + R     ++ ++   +   TK+  +P  K T+  + P +++
Sbjct: 577 VTKEIDTGASAAANVPETKHRVSGTVVEGKDSKSQLLATKKVKKPTIKNTEHRRAPESTV 636

Query: 586 DADDPLE 606
               P+E
Sbjct: 637 PIGPPVE 643


>AL032623-14|CAA21518.1|  593|Caenorhabditis elegans Hypothetical
           protein Y43F8B.14 protein.
          Length = 593

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +1

Query: 448 SEELRSRDFRKELDDREKDVKTTTTKRTSEP 540
           S+E +SR  +  L D +KD K +  +R  EP
Sbjct: 210 SDETKSRKLKTSLKDHQKDFKKSLAQREKEP 240


>AF016674-6|AAB66129.1|  530|Caenorhabditis elegans Hypothetical
           protein C03H5.6 protein.
          Length = 530

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 19/66 (28%), Positives = 30/66 (45%)
 Frame = +2

Query: 455 NYALVIFVRSWMIEKKMLKLRLQNVQVNHKQKELRLIKFLQQVLMLMILLKAIPLTLMIQ 634
           N+  + F ++W +E    +L L NVQ  H  + L  I    + +    +   +PL    Q
Sbjct: 5   NFLPIAFCKAWCVECPDRELILANVQYEHVLEMLECIHPTYKAVDDQSVHILLPLAYDYQ 64

Query: 635 MMILLH 652
           M  LLH
Sbjct: 65  MEGLLH 70


>Z93380-5|CAB07601.1|  240|Caenorhabditis elegans Hypothetical
           protein F28C12.6 protein.
          Length = 240

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 16/63 (25%), Positives = 41/63 (65%), Gaps = 5/63 (7%)
 Frame = +2

Query: 440 KGHLRNY-ALVIFVRSWMIEKKMLK--LRLQNVQVNHKQKELRLI--KFLQQVLMLMILL 604
           K  L +Y +L+ F+R  +  +++++  + ++ VQ+NH+++  R+I  K + +++ L+I++
Sbjct: 146 KKRLGDYDSLLQFIRRKLHNRQIIQHSVEMKQVQINHRRQTQRIIKPKHIFRIIFLIIII 205

Query: 605 KAI 613
             I
Sbjct: 206 VII 208


>Z81546-1|CAB04449.2|  859|Caenorhabditis elegans Hypothetical
           protein F53A2.1 protein.
          Length = 859

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 16/39 (41%), Positives = 22/39 (56%)
 Frame = +1

Query: 442 GTSEELRSRDFRKELDDREKDVKTTTTKRTSEPQAKRTK 558
           GTS++L S  F+KE+D       TTTT +TS     R +
Sbjct: 296 GTSQKLLS--FQKEIDSLNNVTSTTTTLQTSTYTTSRPR 332


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,898,266
Number of Sequences: 27780
Number of extensions: 260534
Number of successful extensions: 770
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 738
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 769
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2255353870
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)