Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP17_F_E03
         (959 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    31   0.24 
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    30   0.56 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   3.9  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 31.1 bits (67), Expect = 0.24
 Identities = 13/27 (48%), Positives = 13/27 (48%)
 Frame = -2

Query: 955 PGXTPRGXXXXPPPPPGGXXGAXPPXP 875
           P   P      PPPPP G  GA PP P
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPPPP 778



 Score = 29.1 bits (62), Expect = 0.97
 Identities = 13/28 (46%), Positives = 13/28 (46%), Gaps = 5/28 (17%)
 Frame = -3

Query: 948 PPPGAXXXXPPPPP-----GGXGXPXPP 880
           PPP      PPPPP      G G P PP
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPPPPP 779



 Score = 27.9 bits (59), Expect = 2.2
 Identities = 12/23 (52%), Positives = 12/23 (52%)
 Frame = -3

Query: 948 PPPGAXXXXPPPPPGGXGXPXPP 880
           PPPG     PPPPP     P PP
Sbjct: 766 PPPGVAGAGPPPPP-----PPPP 783



 Score = 25.8 bits (54), Expect = 9.1
 Identities = 10/22 (45%), Positives = 10/22 (45%)
 Frame = -2

Query: 958 PPGXTPRGXXXXPPPPPGGXXG 893
           PPG    G    PPPPP    G
Sbjct: 767 PPGVAGAGPPPPPPPPPAVSAG 788


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 29.9 bits (64), Expect = 0.56
 Identities = 12/27 (44%), Positives = 13/27 (48%)
 Frame = -2

Query: 943 PRGXXXXPPPPPGGXXGAXPPXPXXXG 863
           P G    PPPPPG    + PP P   G
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPPPPPPPG 31


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.1 bits (57), Expect = 3.9
 Identities = 11/28 (39%), Positives = 12/28 (42%)
 Frame = +2

Query: 824 PPPXXPPXXPXSXSXPXXXGGXGXPXPP 907
           PPP  PP    + S P    G   P PP
Sbjct: 337 PPPPPPPRSNAAGSIPLPPQGRSAPPPP 364


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,704,432
Number of Sequences: 5004
Number of extensions: 19460
Number of successful extensions: 140
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 491307756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)