Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP17_F_E02
         (905 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    31   0.23 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    29   1.2  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    28   1.6  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    28   1.6  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    28   2.1  
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr...    27   2.8  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    27   4.8  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    26   6.4  
SPBC1347.05c |||DNAJ domain protein Scj1|Schizosaccharomyces pom...    26   6.4  

>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 31.1 bits (67), Expect = 0.23
 Identities = 21/68 (30%), Positives = 21/68 (30%)
 Frame = -2

Query: 904 PXGGXXGAXXXXXXXGGGXXGGXXGGXXXGGXPXGXXXXPXGXXPPPGXGGXXFXXXXRG 725
           P  G  G        G G   G  GG   GG P G    P G    PG  G        G
Sbjct: 200 PPPGPGGFGGFGGFGGEGHHHGGHGGF--GGGPGGFEGGPGGFGGGPGGFGGGLGGFGGG 257

Query: 724 XGALGXXP 701
            G  G  P
Sbjct: 258 PGGFGGGP 265



 Score = 27.5 bits (58), Expect = 2.8
 Identities = 21/62 (33%), Positives = 21/62 (33%), Gaps = 1/62 (1%)
 Frame = -1

Query: 896 GXXGGXXXXXXXRGGXXGGGXGGGXXGGXXXGXXXXPXXGXPPPXXGGXXFXXXXPGG-G 720
           G  GG        GG  GGG GG   G    G       G      GG       PGG G
Sbjct: 211 GGFGGEGHHHGGHGGF-GGGPGGFEGGPGGFGGGPGGFGGGLGGFGGGPGGFGGGPGGHG 269

Query: 719 GP 714
           GP
Sbjct: 270 GP 271



 Score = 27.5 bits (58), Expect = 2.8
 Identities = 16/45 (35%), Positives = 16/45 (35%), Gaps = 1/45 (2%)
 Frame = -2

Query: 898 GGXXGAXXXXXXXGGGXXGGXXGGXXX-GGXPXGXXXXPXGXXPP 767
           GG  G         GG  GG  GG    GG P G    P G   P
Sbjct: 227 GGGPGGFEGGPGGFGGGPGGFGGGLGGFGGGPGGFGGGPGGHGGP 271



 Score = 26.2 bits (55), Expect = 6.4
 Identities = 12/22 (54%), Positives = 12/22 (54%), Gaps = 1/22 (4%)
 Frame = +2

Query: 566 GGGXXXPPP-PGGXXGFPXXXG 628
           GGG   PPP PGG  GF    G
Sbjct: 194 GGGSGGPPPGPGGFGGFGGFGG 215


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 16/61 (26%), Positives = 17/61 (27%), Gaps = 2/61 (3%)
 Frame = +1

Query: 721 PPPGXXXQKXX--PPXXGGGXPXXGXXXXPXXXPPXXPPPXPPPXXPPRXXXXXXXPPXX 894
           PPP    +     PP              P   PP  PP  PP   P         PP  
Sbjct: 391 PPPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLP 450

Query: 895 P 897
           P
Sbjct: 451 P 451



 Score = 25.8 bits (54), Expect = 8.5
 Identities = 20/68 (29%), Positives = 21/68 (30%), Gaps = 9/68 (13%)
 Frame = +1

Query: 721 PPPGXXXQKXXPPXXGG-GXPXXGXXXXPXXXPPXXP------PPXPP--PXXPPRXXXX 873
           PP G   +   PP       P       P   PP  P      PP PP  P  PP     
Sbjct: 404 PPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGM 463

Query: 874 XXXPPXXP 897
              PP  P
Sbjct: 464 PAAPPLPP 471



 Score = 25.8 bits (54), Expect = 8.5
 Identities = 17/56 (30%), Positives = 17/56 (30%), Gaps = 2/56 (3%)
 Frame = -2

Query: 703 PPXXXPFXGXG-PXXXXXXKGFSXXXPXXXGEPXXPPWGGXXPXPPP-XGPGPXXP 542
           PP   P    G P             P   G P  PP     P PPP   P P  P
Sbjct: 432 PPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPPAPAPAPAAP 487


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 13/30 (43%), Positives = 13/30 (43%)
 Frame = +1

Query: 814 PPXXPPPXPPPXXPPRXXXXXXXPPXXPXG 903
           PP  PPP PP   PP        PP  P G
Sbjct: 5   PPGNPPPPPP---PPGFEPPSQPPPPPPPG 31



 Score = 27.9 bits (59), Expect = 2.1
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = +3

Query: 801 PXGXPPXXXPPXXPPXXPPP 860
           P   PP   PP  PP  PPP
Sbjct: 11  PPPPPPGFEPPSQPPPPPPP 30



 Score = 27.1 bits (57), Expect = 3.7
 Identities = 11/26 (42%), Positives = 11/26 (42%)
 Frame = -2

Query: 571 PPXGPGPXXPXXGXGXGXQKPXPXPP 494
           PP  P P  P  G     Q P P PP
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPPPPPPP 30



 Score = 26.6 bits (56), Expect = 4.8
 Identities = 10/24 (41%), Positives = 10/24 (41%)
 Frame = +3

Query: 828 PPXXPPXXPPPXXXXXXXAPXXPP 899
           PP  PP  PPP        P  PP
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPPPPP 28



 Score = 26.2 bits (55), Expect = 6.4
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = +2

Query: 815 PXXXPPXXPPXXPPPG 862
           P   PP  PP  PPPG
Sbjct: 16  PGFEPPSQPPPPPPPG 31


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 16/62 (25%), Positives = 16/62 (25%)
 Frame = +3

Query: 711  PRAPXPRXXXXKXXPPXPGGGXXPXGXXXXPXGXPPXXXPPXXPPXXPPPXXXXXXXAPX 890
            P  P P         P  G    P      P   P    PP  PP   PP        P 
Sbjct: 1169 PPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPP 1228

Query: 891  XP 896
             P
Sbjct: 1229 VP 1230



 Score = 26.6 bits (56), Expect = 4.8
 Identities = 15/63 (23%), Positives = 15/63 (23%)
 Frame = +3

Query: 711  PRAPXPRXXXXKXXPPXPGGGXXPXGXXXXPXGXPPXXXPPXXPPXXPPPXXXXXXXAPX 890
            P  P P        P               P   P    PP  PP   PP        P 
Sbjct: 1150 PPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPP 1209

Query: 891  XPP 899
             PP
Sbjct: 1210 VPP 1212



 Score = 25.8 bits (54), Expect = 8.5
 Identities = 20/69 (28%), Positives = 20/69 (28%)
 Frame = -2

Query: 703  PPXXXPFXGXGPXXXXXXKGFSXXXPXXXGEPXXPPWGGXXPXPPPXGPGPXXPXXGXGX 524
            PP   P  G  P       G     P     P   P  G  P PPP    P  P    G 
Sbjct: 1169 PPVPAPSSGI-PPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPP-STAPPVPTPSAGL 1226

Query: 523  GXQKPXPXP 497
                P P P
Sbjct: 1227 ---PPVPVP 1232


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = +2

Query: 839 PPXXPPPGXXXGXPGPPXXP 898
           PP  PPPG     P PP  P
Sbjct: 762 PPPPPPPGVAGAGPPPPPPP 781



 Score = 27.5 bits (58), Expect = 2.8
 Identities = 14/43 (32%), Positives = 14/43 (32%)
 Frame = -2

Query: 361 PPXXPKNXFXPXLXXXGGPXPPXXVXXXGPXXPPPKGGXPXPG 233
           PP  P     P       P PP      GP  PPP  G    G
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAG 774



 Score = 27.5 bits (58), Expect = 2.8
 Identities = 11/26 (42%), Positives = 11/26 (42%)
 Frame = +2

Query: 827 PPXXPPXXPPPGXXXGXPGPPXXPXG 904
           P   P   PPP    G P PP  P G
Sbjct: 744 PAPAPIPVPPPAPIMGGPPPPPPPPG 769



 Score = 27.5 bits (58), Expect = 2.8
 Identities = 15/34 (44%), Positives = 15/34 (44%), Gaps = 5/34 (14%)
 Frame = -2

Query: 580 PXPPPX----GPGPXXPXXG-XGXGXQKPXPXPP 494
           P PPP     GP P  P  G  G G   P P PP
Sbjct: 750 PVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783



 Score = 27.1 bits (57), Expect = 3.7
 Identities = 11/26 (42%), Positives = 11/26 (42%)
 Frame = +2

Query: 521 PXPXPXXXXPXXRAXGGGXXXPPPPG 598
           P P P    P     GG    PPPPG
Sbjct: 744 PAPAPIPVPPPAPIMGGPPPPPPPPG 769


>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 305

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 13/32 (40%), Positives = 13/32 (40%)
 Frame = -1

Query: 896 GXXGGXXXXXXXRGGXXGGGXGGGXXGGXXXG 801
           G  GG       RGG  GGG GG   G    G
Sbjct: 20  GFNGGRGGFGGGRGGARGGGRGGARGGRGGRG 51


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = +1

Query: 814 PPXXPPPXPPPXXPPR 861
           P   PPP PPP  PP+
Sbjct: 234 PLPAPPPPPPPTLPPQ 249



 Score = 23.0 bits (47), Expect(2) = 7.4
 Identities = 8/15 (53%), Positives = 8/15 (53%)
 Frame = +1

Query: 802 PXXXPPXXPPPXPPP 846
           P   PP  PPP  PP
Sbjct: 234 PLPAPPPPPPPTLPP 248



 Score = 21.0 bits (42), Expect(2) = 7.4
 Identities = 7/12 (58%), Positives = 7/12 (58%)
 Frame = +1

Query: 826 PPPXPPPXXPPR 861
           PPP   P  PPR
Sbjct: 273 PPPPATPSQPPR 284


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 13/44 (29%), Positives = 13/44 (29%)
 Frame = +3

Query: 768  GGXXPXGXXXXPXGXPPXXXPPXXPPXXPPPXXXXXXXAPXXPP 899
            GG  P      P   P    PP      PPP        P  PP
Sbjct: 1679 GGMAPAHPVSTPPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPP 1722



 Score = 25.8 bits (54), Expect = 8.5
 Identities = 22/72 (30%), Positives = 22/72 (30%), Gaps = 3/72 (4%)
 Frame = +3

Query: 699  GGFXPRAPX--PRXXXXKXXPPXPGGGXXPXGXXXXPXGXPPXXXP-PXXPPXXPPPXXX 869
            GG  P  P   P        PP       P      P   PP   P P  PP  PPP   
Sbjct: 1679 GGMAPAHPVSTPPVRPQSAAPPQMSAPTPPPPPMSVPP--PPSAPPMPAGPPSAPPP-PL 1735

Query: 870  XXXXAPXXPPXG 905
                AP  P  G
Sbjct: 1736 PASSAPSVPNPG 1747



 Score = 25.8 bits (54), Expect = 8.5
 Identities = 13/40 (32%), Positives = 16/40 (40%)
 Frame = -2

Query: 361  PPXXPKNXFXPXLXXXGGPXPPXXVXXXGPXXPPPKGGXP 242
            PP  P++   P +     P PP  V    P  PP   G P
Sbjct: 1690 PPVRPQSAAPPQMSAPTPPPPPMSVPPP-PSAPPMPAGPP 1728


>SPBC1347.05c |||DNAJ domain protein Scj1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 381

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 11/23 (47%), Positives = 11/23 (47%)
 Frame = -3

Query: 897 GXXGGPGXPXXXPGGGXXGGXXG 829
           G  G PG P   PG G  GG  G
Sbjct: 75  GLNGQPGGPGGGPGEGFPGGGFG 97


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,322,830
Number of Sequences: 5004
Number of extensions: 35175
Number of successful extensions: 273
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 458501510
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)