Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP17_F_E02
         (905 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       24   1.7  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    22   6.7  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 24.2 bits (50), Expect = 1.7
 Identities = 10/27 (37%), Positives = 10/27 (37%)
 Frame = +1

Query: 778 PXXGXXXXPXXXPPXXPPPXPPPXXPP 858
           P  G    P   PP   PP  PP   P
Sbjct: 34  PQRGSPPNPSQGPPPGGPPGAPPSQNP 60



 Score = 23.4 bits (48), Expect = 2.9
 Identities = 13/42 (30%), Positives = 15/42 (35%)
 Frame = +3

Query: 717 APXPRXXXXKXXPPXPGGGXXPXGXXXXPXGXPPXXXPPXXP 842
           AP P+    +  P  P  G  P      P G PP   P   P
Sbjct: 20  APGPQPSPHQS-PQAPQRGSPPNPSQGPPPGGPPGAPPSQNP 60



 Score = 23.4 bits (48), Expect = 2.9
 Identities = 9/22 (40%), Positives = 9/22 (40%)
 Frame = +2

Query: 815 PXXXPPXXPPXXPPPGXXXGXP 880
           P    P  P   PPPG   G P
Sbjct: 34  PQRGSPPNPSQGPPPGGPPGAP 55



 Score = 22.2 bits (45), Expect = 6.7
 Identities = 10/34 (29%), Positives = 10/34 (29%)
 Frame = +3

Query: 756 PXPGGGXXPXGXXXXPXGXPPXXXPPXXPPXXPP 857
           P P     P          P    PP  PP  PP
Sbjct: 23  PQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPP 56



 Score = 21.8 bits (44), Expect = 8.8
 Identities = 12/35 (34%), Positives = 12/35 (34%), Gaps = 3/35 (8%)
 Frame = +2

Query: 521 PXPXPXXXXPXXRAXGGGXXXP---PPPGGXXGFP 616
           P P P           G    P   PPPGG  G P
Sbjct: 21  PGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAP 55


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 22.2 bits (45), Expect = 6.7
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +1

Query: 814 PPXXPPPXPPP 846
           PP   PP PPP
Sbjct: 338 PPKPAPPPPPP 348


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 235,418
Number of Sequences: 438
Number of extensions: 7543
Number of successful extensions: 12
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29388177
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)