Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP17_F_D22
(879 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC839.17c |fkh1||FKBP-type peptidyl-prolyl cis-trans isomerase... 35 0.018
SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase |S... 31 0.29
SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces p... 28 2.0
SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyc... 27 2.7
SPBC31F10.04c |srb4|med17|mediator complex subunit Srb4|Schizosa... 27 3.5
SPBC16H5.11c |skb1|rmt5|type II protein arginine N-methyltransfe... 27 3.5
SPAC2G11.07c |ptc3||protein phosphatase 2C Ptc3|Schizosaccharomy... 27 3.5
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy... 27 4.7
SPBC776.12c |hsk1||serine/threonine protein kinase Hsk1|Schizosa... 26 6.1
SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces... 26 6.1
SPBC646.12c |gap1|src1, sar1|GTPase activating protein Gap1|Schi... 26 8.1
SPAC12B10.11 |exg2||glucan 1,3-beta-glucosidase Exg2|Schizosacch... 26 8.1
>SPBC839.17c |fkh1||FKBP-type peptidyl-prolyl cis-trans isomerase
Fkh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 112
Score = 34.7 bits (76), Expect = 0.018
Identities = 24/103 (23%), Positives = 45/103 (43%), Gaps = 1/103 (0%)
Frame = +3
Query: 234 VIKKILETGGGMPL-HDGCTVSIAFSGYWENELQPFDVMSLNNPMTVDLKDSGLLPGLDI 410
V K+++ +G G G +++ ++G N + + +P + L+ G D
Sbjct: 3 VEKQVISSGNGQDFPKPGDRITMHYTGTLTNGKKFDSSVDRGSPFVCTIGVGQLIRGWDE 62
Query: 411 AVRSMLVGEISLFLFSYKVMYGEMGIPPRIKPKSDCVFYIKLV 539
V M +GE + + YG G P I P S +F ++L+
Sbjct: 63 GVPKMSLGEKAKLTITPDYGYGPRGFPGLIPPNSTLLFDVELL 105
>SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 362
Score = 30.7 bits (66), Expect = 0.29
Identities = 24/83 (28%), Positives = 36/83 (43%)
Frame = +3
Query: 291 VSIAFSGYWENELQPFDVMSLNNPMTVDLKDSGLLPGLDIAVRSMLVGEISLFLFSYKVM 470
VS+ + G N + FD P T +L ++ G D+ + M VG +
Sbjct: 279 VSMRYIGRLTNG-KVFDKNITGKPFTFNLGLEEVIKGWDVGIVGMQVGGERTIHIPAAMA 337
Query: 471 YGEMGIPPRIKPKSDCVFYIKLV 539
YG + P I SD VF +KL+
Sbjct: 338 YGSKRL-PGIPANSDLVFDVKLL 359
>SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1272
Score = 27.9 bits (59), Expect = 2.0
Identities = 26/92 (28%), Positives = 42/92 (45%)
Frame = +3
Query: 513 DCVFYIKLVKSMLTPKEGALNLNEPNTFQRVHHEVKLLYSSGYSLYKIKNFSLAIHLFNK 692
+ VF + LV L+ K ++N TF+ E+ L + + K S I L
Sbjct: 1122 ELVFTLLLVYIKLSLKG---SINSQITFKDFQQELSLCIENLLDSFLSKTNSYKIALNTV 1178
Query: 693 AVRILHKCRLADEEDEXIQEKLLIKLYINLAI 788
VRI + + D+ ++ KLL+KL +L I
Sbjct: 1179 LVRICEEASRNEHSDQYLR-KLLLKLITDLYI 1209
>SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1679
Score = 27.5 bits (58), Expect = 2.7
Identities = 13/29 (44%), Positives = 20/29 (68%)
Frame = +3
Query: 660 NFSLAIHLFNKAVRILHKCRLADEEDEXI 746
NFS++I L NKA++ L K ++A D+ I
Sbjct: 251 NFSVSISLRNKAIQHLLKSKIAANTDKAI 279
>SPBC31F10.04c |srb4|med17|mediator complex subunit
Srb4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 545
Score = 27.1 bits (57), Expect = 3.5
Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
Frame = -3
Query: 472 YITLYENKN-SDISPTSIDLTAISSPGSKPLSLRSTVIGLFKLITSNGCNSFSQYPENAI 296
+ TL +N +D S+D A + + + T L +TS S++ EN+I
Sbjct: 82 FATLDSKRNVNDTEVESMDSQAYKKELIEQIMIAQTECSLALDMTSL---LLSKFKENSI 138
Query: 295 ETVHPSCKGIPPP 257
ET+ P K PP
Sbjct: 139 ETISPFLKSTVPP 151
>SPBC16H5.11c |skb1|rmt5|type II protein arginine
N-methyltransferase Skb1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 645
Score = 27.1 bits (57), Expect = 3.5
Identities = 12/28 (42%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
Frame = +3
Query: 525 YIKLVKSMLTPK--EGALNLNEPNTFQR 602
YI V +++PK A N+N+PN F+R
Sbjct: 456 YISYVTPIMSPKLWSEARNMNDPNAFER 483
>SPAC2G11.07c |ptc3||protein phosphatase 2C Ptc3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 414
Score = 27.1 bits (57), Expect = 3.5
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = -3
Query: 511 DFGFILGGIPISPYITLYENKNSDISPTSIDLTAI 407
DFG + G + +S I +E KNS++ P +TA+
Sbjct: 176 DFGRVNGNLALSRAIGDFEFKNSNLEPEKQIVTAL 210
>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 4924
Score = 26.6 bits (56), Expect = 4.7
Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Frame = +3
Query: 102 IYEENDD-NDTTESKVFKTIDILGEPVKNFEVLKNELIPVDENH 230
IYE DD DT S F + L + KNE++P+ +H
Sbjct: 230 IYEIGDDLEDTFRSFSFLELHSLAIKLSKLVTCKNEVVPIMVSH 273
>SPBC776.12c |hsk1||serine/threonine protein kinase
Hsk1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 507
Score = 26.2 bits (55), Expect = 6.1
Identities = 17/72 (23%), Positives = 34/72 (47%)
Frame = +3
Query: 39 LDKRSYHQECTTTGSILHINEIYEENDDNDTTESKVFKTIDILGEPVKNFEVLKNELIPV 218
L + H++ T S I E+ +EN + + ++ + DI + E + + +
Sbjct: 8 LSPKVTHEQQTDIDSECEITEVDDENVNENKSQEMIQ---DIPARDREEIENITRTFVEL 64
Query: 219 DENHYVIKKILE 254
EN+ +I+KI E
Sbjct: 65 QENYRLIEKIGE 76
>SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 466
Score = 26.2 bits (55), Expect = 6.1
Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
Frame = -3
Query: 460 YENKNSDISPTSIDLTAISSPGSKPLSLRSTVIGLFKLITSNGCNSF-SQYPENAIETVH 284
YE + D+ + LT +KP R + K T++ +SF S+ E A E
Sbjct: 256 YERRRGDVKDRAEALTITKFKTAKPTYKRPGMGPGGKDATASSSSSFSSKREEAAAEPSS 315
Query: 283 PSCKGIPPP 257
+ IPPP
Sbjct: 316 STATDIPPP 324
>SPBC646.12c |gap1|src1, sar1|GTPase activating protein
Gap1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 766
Score = 25.8 bits (54), Expect = 8.1
Identities = 11/47 (23%), Positives = 22/47 (46%)
Frame = +3
Query: 189 EVLKNELIPVDENHYVIKKILETGGGMPLHDGCTVSIAFSGYWENEL 329
E L N P H +++++ E +P D C V++ W++ +
Sbjct: 451 ENLDNLYDPDSHVHLILQELGEPCKSVPQEDNCLVTLPLYNRWDSSI 497
>SPAC12B10.11 |exg2||glucan 1,3-beta-glucosidase
Exg2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 570
Score = 25.8 bits (54), Expect = 8.1
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = +3
Query: 576 LNEPNTFQRVHHEVKLLYSSGYSLYKIKNFSLAIHL 683
LNEPN F H++ + Y++ + NF+ I L
Sbjct: 336 LNEPNFFVLDEHKITDWHKQAYAVIRQSNFTGLISL 371
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,539,790
Number of Sequences: 5004
Number of extensions: 74691
Number of successful extensions: 220
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 211
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 220
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 440481800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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