Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP17_F_D21
         (843 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_1147 + 9606860-9606989,9607078-9607811,9607890-9608126,960...    33   0.22 
01_05_0401 - 21801454-21801888                                         30   2.7  
01_06_0912 + 32933362-32933515,32933628-32933697,32933893-329340...    28   8.1  

>06_01_1147 +
           9606860-9606989,9607078-9607811,9607890-9608126,
           9608433-9609265,9609598-9609856,9610294-9610377,
           9610484-9610498
          Length = 763

 Score = 33.5 bits (73), Expect = 0.22
 Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 3/65 (4%)
 Frame = -3

Query: 205 PNPVHPN-EFLPVGEARQPWLVRQPKGE--VRRTPCTRMPNKATQDNSLHCVSL*TTQIL 35
           P PV PN E + +G+AR+ + ++ PK +  V+ TPC   P + T   S   +       L
Sbjct: 425 PLPVPPNDEIMTLGDARKTF-IQWPKEDIVVKMTPCPSRPTELTPPKSKLSIEAPRGPAL 483

Query: 34  RIPYS 20
            +P+S
Sbjct: 484 SVPHS 488


>01_05_0401 - 21801454-21801888
          Length = 144

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -2

Query: 179 SSGWRSSSALAGSTAEGGGAAYA 111
           S+GWR ++ L G  AE GG A A
Sbjct: 57  SAGWRRTAMLVGDAAEAGGGAEA 79


>01_06_0912 +
           32933362-32933515,32933628-32933697,32933893-32934035,
           32934127-32934637,32934693-32934729,32935254-32935350,
           32936774-32937153
          Length = 463

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -2

Query: 173 GWRSSSALAGSTAEGGGAAYA 111
           GWR ++ L G  AE GG+A A
Sbjct: 404 GWRRTAMLVGDAAEAGGSAEA 424


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,797,132
Number of Sequences: 37544
Number of extensions: 178331
Number of successful extensions: 544
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 520
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 542
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2338704516
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)