Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP17_F_D21
         (843 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X56213-1|CAA39670.1| 1651|Caenorhabditis elegans vitellogenin pr...    28   7.2  
M11499-1|AAA28165.1|  259|Caenorhabditis elegans protein ( C.ele...    28   7.2  
AF047659-4|AAQ01529.1|  201|Caenorhabditis elegans Vitellogenin ...    28   7.2  
AF047659-3|AAC04423.2| 1650|Caenorhabditis elegans Vitellogenin ...    28   7.2  
AF047659-2|AAQ91901.1| 1651|Caenorhabditis elegans Vitellogenin ...    28   7.2  
AC024772-3|AAF60538.1| 2344|Caenorhabditis elegans Hypothetical ...    28   7.2  

>X56213-1|CAA39670.1| 1651|Caenorhabditis elegans vitellogenin
           protein.
          Length = 1651

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = -1

Query: 204 PTPSTPMSFFRLEKLVSLGWFDSRRGR 124
           P PSTP    RL+  V+L W D    R
Sbjct: 53  PVPSTPQGISRLQSQVTLQWTDGNTVR 79


>M11499-1|AAA28165.1|  259|Caenorhabditis elegans protein (
           C.elegans vitellogenin6 gene ancoding yolk protein
           VIT180. ).
          Length = 259

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = -1

Query: 204 PTPSTPMSFFRLEKLVSLGWFDSRRGR 124
           P PSTP    RL+  V+L W D    R
Sbjct: 53  PVPSTPQGISRLQSQVTLQWTDGNTVR 79


>AF047659-4|AAQ01529.1|  201|Caenorhabditis elegans Vitellogenin
           structural genes (yolk protein genes) protein 6, isoform
           b protein.
          Length = 201

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = -1

Query: 204 PTPSTPMSFFRLEKLVSLGWFDSRRGR 124
           P PSTP    RL+  V+L W D    R
Sbjct: 53  PVPSTPQGISRLQSQVTLQWTDGNTVR 79


>AF047659-3|AAC04423.2| 1650|Caenorhabditis elegans Vitellogenin
           structural genes (yolk protein genes) protein 6, isoform
           a protein.
          Length = 1650

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = -1

Query: 204 PTPSTPMSFFRLEKLVSLGWFDSRRGR 124
           P PSTP    RL+  V+L W D    R
Sbjct: 53  PVPSTPQGISRLQSQVTLQWTDGNTVR 79


>AF047659-2|AAQ91901.1| 1651|Caenorhabditis elegans Vitellogenin
           structural genes (yolk protein genes) protein 6, isoform
           c protein.
          Length = 1651

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = -1

Query: 204 PTPSTPMSFFRLEKLVSLGWFDSRRGR 124
           P PSTP    RL+  V+L W D    R
Sbjct: 53  PVPSTPQGISRLQSQVTLQWTDGNTVR 79


>AC024772-3|AAF60538.1| 2344|Caenorhabditis elegans Hypothetical
           protein Y40C5A.3 protein.
          Length = 2344

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 13/44 (29%), Positives = 20/44 (45%)
 Frame = -3

Query: 241 SPRVLRGPNQSGPNPVHPNEFLPVGEARQPWLVRQPKGEVRRTP 110
           +P++  GP Q  PN V  +        R P ++    G V +TP
Sbjct: 486 APKIPEGPAQPSPNAVKTSYGSSPAAPRVPEMIEVAPGNVEKTP 529


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,629,058
Number of Sequences: 27780
Number of extensions: 145273
Number of successful extensions: 298
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 293
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 298
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2087513582
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)